Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SOX2P48431 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
SOX2P48431 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
SOX2P48431 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC12.89□□□□□ -0.35
SOX2P48431 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SOX2P48431 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC12.89□□□□□ -0.35
SOX2P48431 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SOX2P48431 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
SOX2P48431 AC073548.1-201ENST00000624088 1882 ntBASIC12.89□□□□□ -0.35
SOX2P48431 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
SOX2P48431 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
SOX2P48431 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
SOX2P48431 CROT-203ENST00000419147 2959 ntTSL 2 BASIC12.89□□□□□ -0.35
SOX2P48431 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC12.89□□□□□ -0.35
SOX2P48431 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC12.89□□□□□ -0.35
SOX2P48431 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
SOX2P48431 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC12.89□□□□□ -0.35
SOX2P48431 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
SOX2P48431 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
SOX2P48431 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
SOX2P48431 CETP-203ENST00000566128 1733 ntTSL 5 BASIC12.89□□□□□ -0.35
SOX2P48431 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC12.89□□□□□ -0.35
SOX2P48431 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
SOX2P48431 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SOX2P48431 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SOX2P48431 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SOX2P48431 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SOX2P48431 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC12.89□□□□□ -0.35
SOX2P48431 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SOX2P48431 GIMAP3P-201ENST00000495150 836 ntBASIC12.89□□□□□ -0.35
SOX2P48431 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC12.89□□□□□ -0.35
SOX2P48431 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC12.89□□□□□ -0.35
SOX2P48431 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC12.89□□□□□ -0.35
SOX2P48431 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC12.89□□□□□ -0.35
SOX2P48431 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SOX2P48431 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
SOX2P48431 RPL28-205ENST00000558131 444 ntTSL 5 BASIC12.89□□□□□ -0.35
SOX2P48431 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC12.89□□□□□ -0.35
SOX2P48431 IFT20-206ENST00000578122 834 ntTSL 2 BASIC12.89□□□□□ -0.35
SOX2P48431 IFT20-208ENST00000578985 831 ntTSL 3 BASIC12.89□□□□□ -0.35
SOX2P48431 AC004466.1-201ENST00000599515 1080 ntBASIC12.89□□□□□ -0.35
SOX2P48431 RNA5-8SN1-201ENST00000610460 153 ntBASIC12.89□□□□□ -0.35
SOX2P48431 RNA5-8SN5-202ENST00000612463 153 ntBASIC12.89□□□□□ -0.35
SOX2P48431 RNA5-8SN4-201ENST00000613359 153 ntBASIC12.89□□□□□ -0.35
SOX2P48431 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC12.89□□□□□ -0.35
SOX2P48431 RNA5-8SN5-201ENST00000619471 153 ntBASIC12.89□□□□□ -0.35
SOX2P48431 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
SOX2P48431 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SOX2P48431 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
SOX2P48431 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC12.89□□□□□ -0.35
SOX2P48431 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
SOX2P48431 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
SOX2P48431 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC12.89□□□□□ -0.35
SOX2P48431 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
SOX2P48431 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
SOX2P48431 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC12.89□□□□□ -0.35
SOX2P48431 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SOX2P48431 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SOX2P48431 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
SOX2P48431 TCF12-201ENST00000267811 6061 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SOX2P48431 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
SOX2P48431 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SOX2P48431 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC12.89□□□□□ -0.35
SOX2P48431 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SOX2P48431 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC12.89□□□□□ -0.35
SOX2P48431 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC12.89□□□□□ -0.35
SOX2P48431 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC12.89□□□□□ -0.35
SOX2P48431 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC12.89□□□□□ -0.35
SOX2P48431 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
SOX2P48431 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
SOX2P48431 RBL1-202ENST00000373664 5684 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
SOX2P48431 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
SOX2P48431 AC015909.5-201ENST00000624336 2266 ntBASIC12.88□□□□□ -0.35
SOX2P48431 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
SOX2P48431 AMT-232ENST00000636199 1546 ntTSL 5 BASIC12.88□□□□□ -0.35
SOX2P48431 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
SOX2P48431 EPHB1-201ENST00000398015 4672 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
SOX2P48431 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
SOX2P48431 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC12.88□□□□□ -0.35
SOX2P48431 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC12.88□□□□□ -0.35
SOX2P48431 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
SOX2P48431 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
SOX2P48431 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC12.88□□□□□ -0.35
SOX2P48431 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC12.88□□□□□ -0.35
SOX2P48431 BAG2-201ENST00000370693 6651 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
SOX2P48431 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
SOX2P48431 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
SOX2P48431 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
SOX2P48431 AC019294.4-201ENST00000561777 2905 ntBASIC12.88□□□□□ -0.35
SOX2P48431 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
SOX2P48431 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
SOX2P48431 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC12.88□□□□□ -0.35
SOX2P48431 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
SOX2P48431 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
SOX2P48431 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
SOX2P48431 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
SOX2P48431 METTL26-204ENST00000397665 558 ntTSL 2 BASIC12.88□□□□□ -0.35
SOX2P48431 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC12.88□□□□□ -0.35
SOX2P48431 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC12.88□□□□□ -0.35
SOX2P48431 FO681548.1-201ENST00000455617 1132 ntBASIC12.88□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms