Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC12.01□□□□□ -0.49
CDX1P47902 SLC25A47P1-201ENST00000531577 414 ntBASIC12.01□□□□□ -0.49
CDX1P47902 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC12.01□□□□□ -0.49
CDX1P47902 NOP2-220ENST00000545915 630 ntTSL 2 BASIC12.01□□□□□ -0.49
CDX1P47902 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC12.01□□□□□ -0.49
CDX1P47902 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC12.01□□□□□ -0.49
CDX1P47902 MIR5189-201ENST00000577370 114 ntBASIC12.01□□□□□ -0.49
CDX1P47902 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC12.01□□□□□ -0.49
CDX1P47902 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC12.01□□□□□ -0.49
CDX1P47902 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 AC107373.2-201ENST00000607735 490 ntBASIC12.01□□□□□ -0.49
CDX1P47902 AC017083.2-201ENST00000608069 979 ntBASIC12.01□□□□□ -0.49
CDX1P47902 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC12.01□□□□□ -0.49
CDX1P47902 AL022328.1-201ENST00000610050 478 ntBASIC12.01□□□□□ -0.49
CDX1P47902 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC12.01□□□□□ -0.49
CDX1P47902 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC12.01□□□□□ -0.49
CDX1P47902 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
CDX1P47902 RAB37-202ENST00000392610 2858 ntTSL 3 BASIC12.01□□□□□ -0.49
CDX1P47902 COL18A1-AS1-201ENST00000397787 3425 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 MTHFR-210ENST00000641407 2387 ntBASIC12.01□□□□□ -0.49
CDX1P47902 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
CDX1P47902 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC12.01□□□□□ -0.49
CDX1P47902 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC12.01□□□□□ -0.49
CDX1P47902 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 USP4-203ENST00000415188 1454 ntTSL 3 BASIC12.01□□□□□ -0.49
CDX1P47902 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 AP001267.2-201ENST00000532619 2086 ntBASIC12.01□□□□□ -0.49
CDX1P47902 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 TSN-212ENST00000536142 3328 ntTSL 2 BASIC12.01□□□□□ -0.49
CDX1P47902 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CDX1P47902 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC12□□□□□ -0.49
CDX1P47902 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CDX1P47902 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC12□□□□□ -0.49
CDX1P47902 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC12□□□□□ -0.49
CDX1P47902 AC127383.1-201ENST00000444697 1800 ntBASIC12□□□□□ -0.49
CDX1P47902 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CDX1P47902 TRPM4-201ENST00000252826 4109 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CDX1P47902 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
CDX1P47902 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CDX1P47902 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC12□□□□□ -0.49
CDX1P47902 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CDX1P47902 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CDX1P47902 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
CDX1P47902 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
CDX1P47902 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC12□□□□□ -0.49
CDX1P47902 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC12□□□□□ -0.49
CDX1P47902 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC12□□□□□ -0.49
CDX1P47902 AC005229.1-201ENST00000392885 409 ntBASIC12□□□□□ -0.49
CDX1P47902 RPL5P21-201ENST00000404620 815 ntBASIC12□□□□□ -0.49
CDX1P47902 BAATP1-201ENST00000412284 1225 ntBASIC12□□□□□ -0.49
CDX1P47902 ARSEP1-201ENST00000420443 635 ntBASIC12□□□□□ -0.49
CDX1P47902 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC12□□□□□ -0.49
CDX1P47902 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC12□□□□□ -0.49
CDX1P47902 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC12□□□□□ -0.49
CDX1P47902 ACA64.2-201ENST00000459014 129 ntBASIC12□□□□□ -0.49
CDX1P47902 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC12□□□□□ -0.49
CDX1P47902 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC12□□□□□ -0.49
CDX1P47902 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC12□□□□□ -0.49
CDX1P47902 AC068587.3-201ENST00000526613 355 ntBASIC12□□□□□ -0.49
CDX1P47902 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC12□□□□□ -0.49
CDX1P47902 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC12□□□□□ -0.49
CDX1P47902 APRT-204ENST00000563655 709 ntTSL 5 BASIC12□□□□□ -0.49
CDX1P47902 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC12□□□□□ -0.49
CDX1P47902 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC12□□□□□ -0.49
CDX1P47902 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC12□□□□□ -0.49
CDX1P47902 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC12□□□□□ -0.49
CDX1P47902 AC025181.2-201ENST00000606994 802 ntBASIC12□□□□□ -0.49
CDX1P47902 AL645728.2-202ENST00000641679 227 ntBASIC12□□□□□ -0.49
CDX1P47902 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
CDX1P47902 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
CDX1P47902 MFF-204ENST00000353339 2186 ntTSL 5 BASIC12□□□□□ -0.49
CDX1P47902 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CDX1P47902 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC12□□□□□ -0.49
CDX1P47902 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC12□□□□□ -0.49
CDX1P47902 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC12□□□□□ -0.49
CDX1P47902 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC12□□□□□ -0.49
CDX1P47902 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
CDX1P47902 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
CDX1P47902 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CDX1P47902 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC12□□□□□ -0.49
CDX1P47902 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
CDX1P47902 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
CDX1P47902 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC12□□□□□ -0.49
CDX1P47902 BMF-201ENST00000354670 4687 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CDX1P47902 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
CDX1P47902 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CDX1P47902 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
CDX1P47902 AL138799.1-201ENST00000448213 1675 ntBASIC12□□□□□ -0.49
CDX1P47902 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC12□□□□□ -0.49
CDX1P47902 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC12□□□□□ -0.49
CDX1P47902 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC12□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms