Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CKS2P33552 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC10.76□□□□□ -0.69
CKS2P33552 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CKS2P33552 ACTR2-202ENST00000377982 2685 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
CKS2P33552 ARHGAP45-210ENST00000590214 4191 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
CKS2P33552 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC10.76□□□□□ -0.69
CKS2P33552 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
CKS2P33552 NCF2-201ENST00000367535 2226 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CKS2P33552 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC10.76□□□□□ -0.69
CKS2P33552 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC10.76□□□□□ -0.69
CKS2P33552 APLP2-201ENST00000263574 3727 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
CKS2P33552 FAM78A-203ENST00000372271 3966 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CKS2P33552 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CKS2P33552 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CKS2P33552 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC10.76□□□□□ -0.69
CKS2P33552 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CKS2P33552 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
CKS2P33552 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
CKS2P33552 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC10.76□□□□□ -0.69
CKS2P33552 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC10.76□□□□□ -0.69
CKS2P33552 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC10.76□□□□□ -0.69
CKS2P33552 HNRNPA1P28-201ENST00000424481 961 ntBASIC10.76□□□□□ -0.69
CKS2P33552 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC10.76□□□□□ -0.69
CKS2P33552 RPL13P2-201ENST00000440687 659 ntBASIC10.76□□□□□ -0.69
CKS2P33552 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC10.76□□□□□ -0.69
CKS2P33552 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC10.76□□□□□ -0.69
CKS2P33552 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC10.76□□□□□ -0.69
CKS2P33552 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC10.76□□□□□ -0.69
CKS2P33552 AC034105.1-201ENST00000563488 319 ntBASIC10.76□□□□□ -0.69
CKS2P33552 AC026150.2-201ENST00000564693 1156 ntBASIC10.76□□□□□ -0.69
CKS2P33552 NFAT5-209ENST00000567239 6376 ntAPPRIS ALT1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CKS2P33552 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
CKS2P33552 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC10.76□□□□□ -0.69
CKS2P33552 AC092902.6-201ENST00000641783 218 ntBASIC10.76□□□□□ -0.69
CKS2P33552 AC092865.6-201ENST00000642101 219 ntBASIC10.76□□□□□ -0.69
CKS2P33552 AC040174.1-201ENST00000563003 2571 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
CKS2P33552 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CKS2P33552 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
CKS2P33552 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC10.76□□□□□ -0.69
CKS2P33552 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
CKS2P33552 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CKS2P33552 MAML3-203ENST00000509479 6844 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CKS2P33552 RUFY4-201ENST00000344321 2352 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
CKS2P33552 CCNY-203ENST00000374704 3960 ntAPPRIS P4 TSL 1 (best) BASIC10.76□□□□□ -0.69
CKS2P33552 SRRM1-201ENST00000323848 4011 ntAPPRIS P2 TSL 1 (best) BASIC10.76□□□□□ -0.69
CKS2P33552 BSDC1-201ENST00000341071 4599 ntTSL 2 BASIC10.76□□□□□ -0.69
CKS2P33552 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CKS2P33552 CCDC92-208ENST00000545135 4883 ntAPPRIS P1 TSL 2 BASIC10.76□□□□□ -0.69
CKS2P33552 AC015688.4-201ENST00000580780 1647 ntBASIC10.76□□□□□ -0.69
CKS2P33552 RGS6-203ENST00000402788 5400 ntTSL 2 BASIC10.76□□□□□ -0.69
CKS2P33552 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
CKS2P33552 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
CKS2P33552 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
CKS2P33552 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC10.76□□□□□ -0.69
CKS2P33552 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CKS2P33552 ATP7B-202ENST00000344297 5861 ntTSL 5 BASIC10.76□□□□□ -0.69
CKS2P33552 SIN3A-202ENST00000394947 6737 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CKS2P33552 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC10.75□□□□□ -0.69
CKS2P33552 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC10.75□□□□□ -0.69
CKS2P33552 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
CKS2P33552 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC10.75□□□□□ -0.69
CKS2P33552 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC10.75□□□□□ -0.69
CKS2P33552 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
CKS2P33552 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
CKS2P33552 KHSRPP1-201ENST00000427983 1768 ntBASIC10.75□□□□□ -0.69
CKS2P33552 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
CKS2P33552 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
CKS2P33552 CANX-202ENST00000452673 4207 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CKS2P33552 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC10.75□□□□□ -0.69
CKS2P33552 NUP58-206ENST00000463407 6360 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
CKS2P33552 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
CKS2P33552 SEC31A-205ENST00000395310 4259 ntAPPRIS P4 TSL 1 (best) BASIC10.75□□□□□ -0.69
CKS2P33552 AP002761.4-201ENST00000565433 3361 ntBASIC10.75□□□□□ -0.69
CKS2P33552 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CKS2P33552 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC10.75□□□□□ -0.69
CKS2P33552 AC005695.1-201ENST00000574307 5672 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
CKS2P33552 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CKS2P33552 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
CKS2P33552 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC10.75□□□□□ -0.69
CKS2P33552 ERCC5-201ENST00000355739 5082 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CKS2P33552 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CKS2P33552 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
CKS2P33552 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC10.75□□□□□ -0.69
CKS2P33552 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
CKS2P33552 ADH5P3-201ENST00000433842 1137 ntBASIC10.75□□□□□ -0.69
CKS2P33552 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC10.75□□□□□ -0.69
CKS2P33552 AC079781.3-201ENST00000449110 356 ntBASIC10.75□□□□□ -0.69
CKS2P33552 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CKS2P33552 ALG1L8P-201ENST00000533887 760 ntBASIC10.75□□□□□ -0.69
CKS2P33552 NT5C-211ENST00000582170 653 ntTSL 3 BASIC10.75□□□□□ -0.69
CKS2P33552 AC025048.3-201ENST00000590609 569 ntBASIC10.75□□□□□ -0.69
CKS2P33552 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
CKS2P33552 AL133215.2-201ENST00000609242 977 ntBASIC10.75□□□□□ -0.69
CKS2P33552 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC10.75□□□□□ -0.69
CKS2P33552 AC005702.4-201ENST00000618393 416 ntBASIC10.75□□□□□ -0.69
CKS2P33552 PLB1-201ENST00000327757 5107 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
CKS2P33552 PPT2-EGFL8-202ENST00000422437 4181 ntAPPRIS P5 TSL 5 BASIC10.75□□□□□ -0.69
CKS2P33552 SLC5A8-201ENST00000536262 4178 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CKS2P33552 TMEM56-201ENST00000370203 6822 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CKS2P33552 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms