Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC13.57□□□□□ -0.24
COL5A1P20908 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL5A1P20908 AC140479.7-201ENST00000636301 2332 ntBASIC13.57□□□□□ -0.24
COL5A1P20908 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC13.57□□□□□ -0.24
COL5A1P20908 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL5A1P20908 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL5A1P20908 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL5A1P20908 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL5A1P20908 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL5A1P20908 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL5A1P20908 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL5A1P20908 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL5A1P20908 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
COL5A1P20908 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
COL5A1P20908 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL5A1P20908 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL5A1P20908 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
COL5A1P20908 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
COL5A1P20908 FAM21EP-201ENST00000417804 985 ntBASIC13.57□□□□□ -0.24
COL5A1P20908 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC13.57□□□□□ -0.24
COL5A1P20908 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC13.57□□□□□ -0.24
COL5A1P20908 RN7SL375P-201ENST00000492442 298 ntBASIC13.57□□□□□ -0.24
COL5A1P20908 EEF1GP8-201ENST00000506566 1154 ntBASIC13.57□□□□□ -0.24
COL5A1P20908 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC13.57□□□□□ -0.24
COL5A1P20908 AC132825.4-202ENST00000578792 434 ntBASIC13.57□□□□□ -0.24
COL5A1P20908 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC13.57□□□□□ -0.24
COL5A1P20908 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC13.57□□□□□ -0.24
COL5A1P20908 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
COL5A1P20908 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL5A1P20908 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL5A1P20908 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL5A1P20908 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC13.57□□□□□ -0.24
COL5A1P20908 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL5A1P20908 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL5A1P20908 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL5A1P20908 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL5A1P20908 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL5A1P20908 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC13.57□□□□□ -0.24
COL5A1P20908 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC13.57□□□□□ -0.24
COL5A1P20908 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC13.56□□□□□ -0.24
COL5A1P20908 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
COL5A1P20908 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC13.56□□□□□ -0.24
COL5A1P20908 RPL13AP3-202ENST00000494676 1473 ntBASIC13.56□□□□□ -0.24
COL5A1P20908 SARS-202ENST00000369923 1882 ntTSL 5 BASIC13.56□□□□□ -0.24
COL5A1P20908 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL5A1P20908 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL5A1P20908 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL5A1P20908 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL5A1P20908 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL5A1P20908 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL5A1P20908 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL5A1P20908 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
COL5A1P20908 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL5A1P20908 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL5A1P20908 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC13.56□□□□□ -0.24
COL5A1P20908 BRI3P1-201ENST00000440440 378 ntBASIC13.56□□□□□ -0.24
COL5A1P20908 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL5A1P20908 RN7SL288P-201ENST00000490496 291 ntBASIC13.56□□□□□ -0.24
COL5A1P20908 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL5A1P20908 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC13.56□□□□□ -0.24
COL5A1P20908 AL627230.2-201ENST00000613254 655 ntBASIC13.56□□□□□ -0.24
COL5A1P20908 AC005274.1-201ENST00000623460 802 ntBASIC13.56□□□□□ -0.24
COL5A1P20908 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC13.56□□□□□ -0.24
COL5A1P20908 ENPP7P8-202ENST00000527856 1345 ntBASIC13.56□□□□□ -0.24
COL5A1P20908 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL5A1P20908 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
COL5A1P20908 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC13.56□□□□□ -0.24
COL5A1P20908 AC015802.1-201ENST00000588104 1449 ntBASIC13.56□□□□□ -0.24
COL5A1P20908 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
COL5A1P20908 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.56□□□□□ -0.24
COL5A1P20908 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC13.56□□□□□ -0.24
COL5A1P20908 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC13.56□□□□□ -0.24
COL5A1P20908 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
COL5A1P20908 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC13.56□□□□□ -0.24
COL5A1P20908 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
COL5A1P20908 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC13.56□□□□□ -0.24
COL5A1P20908 AC099063.4-201ENST00000641099 1602 ntBASIC13.56□□□□□ -0.24
COL5A1P20908 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL5A1P20908 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL5A1P20908 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL5A1P20908 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL5A1P20908 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC13.55□□□□□ -0.24
COL5A1P20908 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL5A1P20908 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC13.55□□□□□ -0.24
COL5A1P20908 EPPIN-201ENST00000336443 1217 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL5A1P20908 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL5A1P20908 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC13.55□□□□□ -0.24
COL5A1P20908 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC13.55□□□□□ -0.24
COL5A1P20908 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
COL5A1P20908 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC13.55□□□□□ -0.24
COL5A1P20908 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL5A1P20908 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC13.55□□□□□ -0.24
COL5A1P20908 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC13.55□□□□□ -0.24
COL5A1P20908 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC13.55□□□□□ -0.24
COL5A1P20908 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC13.55□□□□□ -0.24
COL5A1P20908 MBP-238ENST00000580402 915 ntTSL 5 BASIC13.55□□□□□ -0.24
COL5A1P20908 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC13.55□□□□□ -0.24
COL5A1P20908 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC13.55□□□□□ -0.24
COL5A1P20908 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
COL5A1P20908 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms