Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
SDCBPO00560 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
SDCBPO00560 PI4KA-201ENST00000255882 6752 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
SDCBPO00560 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 PCDHA5-203ENST00000614258 4248 ntBASIC12.47□□□□□ -0.41
SDCBPO00560 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
SDCBPO00560 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SDCBPO00560 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.41
SDCBPO00560 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC12.46□□□□□ -0.41
SDCBPO00560 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
SDCBPO00560 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC12.46□□□□□ -0.41
SDCBPO00560 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
SDCBPO00560 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SDCBPO00560 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SDCBPO00560 TNN-202ENST00000621086 4234 ntTSL 5 BASIC12.46□□□□□ -0.41
SDCBPO00560 SALL4P5-201ENST00000419001 1760 ntBASIC12.46□□□□□ -0.41
SDCBPO00560 HNRNPA1P48-201ENST00000562726 1377 ntBASIC12.46□□□□□ -0.41
SDCBPO00560 AL136172.1-201ENST00000598590 1394 ntBASIC12.46□□□□□ -0.41
SDCBPO00560 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SDCBPO00560 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SDCBPO00560 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SDCBPO00560 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
SDCBPO00560 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC12.46□□□□□ -0.41
SDCBPO00560 PTK2-202ENST00000395218 4415 ntTSL 5 BASIC12.46□□□□□ -0.41
SDCBPO00560 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
SDCBPO00560 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC12.46□□□□□ -0.41
SDCBPO00560 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
SDCBPO00560 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC12.46□□□□□ -0.41
SDCBPO00560 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SDCBPO00560 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
SDCBPO00560 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
SDCBPO00560 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SDCBPO00560 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC12.46□□□□□ -0.41
SDCBPO00560 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
SDCBPO00560 AC236430.1-201ENST00000402231 743 ntBASIC12.46□□□□□ -0.41
SDCBPO00560 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC12.46□□□□□ -0.41
SDCBPO00560 AC098850.1-201ENST00000419919 790 ntBASIC12.46□□□□□ -0.41
SDCBPO00560 WDR53-203ENST00000429115 683 ntTSL 2 BASIC12.46□□□□□ -0.41
SDCBPO00560 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC12.46□□□□□ -0.41
SDCBPO00560 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC12.46□□□□□ -0.41
SDCBPO00560 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
SDCBPO00560 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.41
SDCBPO00560 SPCS2P1-201ENST00000561636 679 ntBASIC12.46□□□□□ -0.41
SDCBPO00560 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC12.46□□□□□ -0.41
SDCBPO00560 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC12.46□□□□□ -0.41
SDCBPO00560 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC12.46□□□□□ -0.41
SDCBPO00560 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC12.46□□□□□ -0.41
SDCBPO00560 AC008494.3-201ENST00000606615 944 ntBASIC12.46□□□□□ -0.41
SDCBPO00560 METTL26-214ENST00000614890 801 ntTSL 3 BASIC12.46□□□□□ -0.41
SDCBPO00560 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC12.46□□□□□ -0.41
SDCBPO00560 PRSS30P-206ENST00000641773 873 ntBASIC12.46□□□□□ -0.41
SDCBPO00560 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
SDCBPO00560 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SDCBPO00560 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
SDCBPO00560 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
SDCBPO00560 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SDCBPO00560 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC12.46□□□□□ -0.41
SDCBPO00560 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
SDCBPO00560 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
SDCBPO00560 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
SDCBPO00560 KIAA1614-201ENST00000367587 3309 ntTSL 2 BASIC12.46□□□□□ -0.42
SDCBPO00560 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC12.46□□□□□ -0.42
SDCBPO00560 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC12.46□□□□□ -0.42
SDCBPO00560 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.42
SDCBPO00560 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
SDCBPO00560 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC12.46□□□□□ -0.42
SDCBPO00560 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC12.46□□□□□ -0.42
SDCBPO00560 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
SDCBPO00560 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
SDCBPO00560 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
SDCBPO00560 AC011840.2-201ENST00000563063 1520 ntBASIC12.46□□□□□ -0.42
SDCBPO00560 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.42
SDCBPO00560 AC215219.1-201ENST00000400706 1817 ntBASIC12.46□□□□□ -0.42
SDCBPO00560 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.42
SDCBPO00560 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
SDCBPO00560 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.42
SDCBPO00560 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
SDCBPO00560 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
SDCBPO00560 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC12.45□□□□□ -0.42
SDCBPO00560 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
SDCBPO00560 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms