Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 SAT1-201ENST00000379251 801 ntTSL 2 BASIC16.14■□□□□ 0.17
VTA1Q9NP79 SAT1-202ENST00000379253 909 ntTSL 2 BASIC16.14■□□□□ 0.17
VTA1Q9NP79 SAT1-203ENST00000379254 868 ntTSL 3 BASIC16.14■□□□□ 0.17
VTA1Q9NP79 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VTA1Q9NP79 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
VTA1Q9NP79 RN7SKP109-201ENST00000410592 316 ntBASIC16.14■□□□□ 0.17
VTA1Q9NP79 AC097065.1-201ENST00000425737 517 ntBASIC16.14■□□□□ 0.17
VTA1Q9NP79 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC16.14■□□□□ 0.17
VTA1Q9NP79 AC004837.1-201ENST00000446267 564 ntBASIC16.14■□□□□ 0.17
VTA1Q9NP79 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC16.14■□□□□ 0.17
VTA1Q9NP79 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC16.14■□□□□ 0.17
VTA1Q9NP79 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC16.14■□□□□ 0.17
VTA1Q9NP79 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC16.14■□□□□ 0.17
VTA1Q9NP79 AC140113.1-201ENST00000603467 169 ntBASIC16.14■□□□□ 0.17
VTA1Q9NP79 AC007250.1-201ENST00000608934 338 ntBASIC16.14■□□□□ 0.17
VTA1Q9NP79 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC16.14■□□□□ 0.17
VTA1Q9NP79 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VTA1Q9NP79 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VTA1Q9NP79 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VTA1Q9NP79 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VTA1Q9NP79 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.14■□□□□ 0.17
VTA1Q9NP79 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.14■□□□□ 0.17
VTA1Q9NP79 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
VTA1Q9NP79 IL9RP3-201ENST00000442856 1674 ntBASIC16.14■□□□□ 0.17
VTA1Q9NP79 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
VTA1Q9NP79 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
VTA1Q9NP79 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VTA1Q9NP79 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.13■□□□□ 0.17
VTA1Q9NP79 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC16.13■□□□□ 0.17
VTA1Q9NP79 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VTA1Q9NP79 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC16.13■□□□□ 0.17
VTA1Q9NP79 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
VTA1Q9NP79 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VTA1Q9NP79 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
VTA1Q9NP79 AC023824.1-201ENST00000562945 2975 ntBASIC16.13■□□□□ 0.17
VTA1Q9NP79 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VTA1Q9NP79 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.13■□□□□ 0.17
VTA1Q9NP79 PYY2-201ENST00000315776 282 ntBASIC16.13■□□□□ 0.17
VTA1Q9NP79 BAK1P1-201ENST00000317045 636 ntBASIC16.13■□□□□ 0.17
VTA1Q9NP79 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VTA1Q9NP79 AC006987.1-201ENST00000413610 527 ntBASIC16.13■□□□□ 0.17
VTA1Q9NP79 RPL13AP19-201ENST00000434320 584 ntBASIC16.13■□□□□ 0.17
VTA1Q9NP79 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VTA1Q9NP79 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
VTA1Q9NP79 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
VTA1Q9NP79 AC007952.4-201ENST00000573866 637 ntBASIC16.13■□□□□ 0.17
VTA1Q9NP79 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC16.13■□□□□ 0.17
VTA1Q9NP79 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC16.13■□□□□ 0.17
VTA1Q9NP79 AL591122.2-201ENST00000624125 1853 ntBASIC16.13■□□□□ 0.17
VTA1Q9NP79 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VTA1Q9NP79 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
VTA1Q9NP79 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
VTA1Q9NP79 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VTA1Q9NP79 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VTA1Q9NP79 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC16.13■□□□□ 0.17
VTA1Q9NP79 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
VTA1Q9NP79 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VTA1Q9NP79 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
VTA1Q9NP79 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC16.13■□□□□ 0.17
VTA1Q9NP79 GPI-205ENST00000586425 1799 ntTSL 5 BASIC16.13■□□□□ 0.17
VTA1Q9NP79 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
VTA1Q9NP79 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC16.13■□□□□ 0.17
VTA1Q9NP79 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.13■□□□□ 0.17
VTA1Q9NP79 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC16.13■□□□□ 0.17
VTA1Q9NP79 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC16.13■□□□□ 0.17
VTA1Q9NP79 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VTA1Q9NP79 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.12■□□□□ 0.17
VTA1Q9NP79 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
VTA1Q9NP79 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VTA1Q9NP79 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC16.12■□□□□ 0.17
VTA1Q9NP79 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.12■□□□□ 0.17
VTA1Q9NP79 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
VTA1Q9NP79 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VTA1Q9NP79 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
VTA1Q9NP79 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
VTA1Q9NP79 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
VTA1Q9NP79 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VTA1Q9NP79 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VTA1Q9NP79 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VTA1Q9NP79 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC16.12■□□□□ 0.17
VTA1Q9NP79 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VTA1Q9NP79 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC16.12■□□□□ 0.17
VTA1Q9NP79 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC16.12■□□□□ 0.17
VTA1Q9NP79 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
VTA1Q9NP79 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC16.12■□□□□ 0.17
VTA1Q9NP79 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC16.12■□□□□ 0.17
VTA1Q9NP79 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC16.12■□□□□ 0.17
VTA1Q9NP79 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC16.12■□□□□ 0.17
VTA1Q9NP79 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC16.12■□□□□ 0.17
VTA1Q9NP79 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC16.12■□□□□ 0.17
VTA1Q9NP79 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VTA1Q9NP79 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VTA1Q9NP79 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VTA1Q9NP79 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
VTA1Q9NP79 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VTA1Q9NP79 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VTA1Q9NP79 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VTA1Q9NP79 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
VTA1Q9NP79 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VTA1Q9NP79 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms