Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 AC232323.1-201ENST00000540724 2099 ntBASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 CICP20-201ENST00000443330 2801 ntBASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 UCKL1-AS1-201ENST00000623569 3602 ntBASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 AC004899.1-201ENST00000424687 1714 ntBASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 MIR1247-201ENST00000408206 136 ntBASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 AL645933.1-201ENST00000440087 609 ntBASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 KRT8P13-201ENST00000463294 1010 ntBASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 NAT9-222ENST00000583476 583 ntTSL 3 BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 AC004923.1-202ENST00000642106 209 ntBASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 AC113367.3-201ENST00000508316 1912 ntBASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 MYADML-201ENST00000474610 2147 ntBASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC14.5□□□□□ -0.09
TRIM39Q9HCM9 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 DPM3-202ENST00000368399 517 ntBASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 HNRNPA1P32-201ENST00000396326 963 ntBASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 GPAA1P2-201ENST00000417923 928 ntBASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 RPL18P13-201ENST00000478088 569 ntBASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 AC005740.2-201ENST00000511085 419 ntBASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 AP000346.4-201ENST00000614827 381 ntBASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 AC117489.1-201ENST00000625169 3217 ntBASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 INTS4P1-203ENST00000641008 3683 ntBASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC14.49□□□□□ -0.09
TRIM39Q9HCM9 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms