Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.03
CDH4P55283 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
CDH4P55283 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.83□□□□□ -0.03
CDH4P55283 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CDH4P55283 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CDH4P55283 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
CDH4P55283 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
CDH4P55283 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CDH4P55283 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC14.83□□□□□ -0.04
CDH4P55283 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
CDH4P55283 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC14.83□□□□□ -0.04
CDH4P55283 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC14.83□□□□□ -0.04
CDH4P55283 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDH4P55283 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDH4P55283 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDH4P55283 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CDH4P55283 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDH4P55283 AC239868.1-201ENST00000369385 493 ntBASIC14.83□□□□□ -0.04
CDH4P55283 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
CDH4P55283 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDH4P55283 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
CDH4P55283 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CDH4P55283 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CDH4P55283 BCYRN1-201ENST00000418539 200 ntBASIC14.83□□□□□ -0.04
CDH4P55283 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC14.83□□□□□ -0.04
CDH4P55283 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC14.83□□□□□ -0.04
CDH4P55283 Z97180.1-201ENST00000445173 988 ntBASIC14.83□□□□□ -0.04
CDH4P55283 AL596276.2-201ENST00000447525 331 ntBASIC14.83□□□□□ -0.04
CDH4P55283 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC14.83□□□□□ -0.04
CDH4P55283 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDH4P55283 KLK3-207ENST00000595952 969 ntTSL 3 BASIC14.83□□□□□ -0.04
CDH4P55283 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC14.83□□□□□ -0.04
CDH4P55283 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC14.83□□□□□ -0.04
CDH4P55283 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC14.83□□□□□ -0.04
CDH4P55283 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
CDH4P55283 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDH4P55283 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.83□□□□□ -0.04
CDH4P55283 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDH4P55283 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDH4P55283 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
CDH4P55283 FAM45BP-202ENST00000592932 1624 ntBASIC14.83□□□□□ -0.04
CDH4P55283 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
CDH4P55283 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDH4P55283 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDH4P55283 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDH4P55283 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CDH4P55283 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDH4P55283 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDH4P55283 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.83□□□□□ -0.04
CDH4P55283 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
CDH4P55283 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC14.83□□□□□ -0.04
CDH4P55283 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC14.83□□□□□ -0.04
CDH4P55283 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDH4P55283 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC14.83□□□□□ -0.04
CDH4P55283 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDH4P55283 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
CDH4P55283 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.83□□□□□ -0.04
CDH4P55283 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDH4P55283 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDH4P55283 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDH4P55283 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
CDH4P55283 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDH4P55283 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDH4P55283 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDH4P55283 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CDH4P55283 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDH4P55283 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
CDH4P55283 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CDH4P55283 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDH4P55283 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC14.82□□□□□ -0.04
CDH4P55283 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
CDH4P55283 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
CDH4P55283 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.82□□□□□ -0.04
CDH4P55283 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDH4P55283 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC14.82□□□□□ -0.04
CDH4P55283 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CDH4P55283 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDH4P55283 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDH4P55283 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDH4P55283 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CDH4P55283 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
CDH4P55283 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC14.82□□□□□ -0.04
CDH4P55283 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDH4P55283 JTB-202ENST00000356648 1040 ntTSL 2 BASIC14.82□□□□□ -0.04
CDH4P55283 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CDH4P55283 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CDH4P55283 NCR3-202ENST00000376071 541 ntTSL 5 BASIC14.82□□□□□ -0.04
CDH4P55283 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC14.82□□□□□ -0.04
CDH4P55283 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC14.82□□□□□ -0.04
CDH4P55283 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CDH4P55283 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC14.82□□□□□ -0.04
CDH4P55283 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC14.82□□□□□ -0.04
CDH4P55283 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC14.82□□□□□ -0.04
CDH4P55283 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC14.82□□□□□ -0.04
CDH4P55283 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC14.82□□□□□ -0.04
CDH4P55283 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC14.82□□□□□ -0.04
CDH4P55283 AL161670.2-201ENST00000557650 1227 ntBASIC14.82□□□□□ -0.04
CDH4P55283 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC14.82□□□□□ -0.04
CDH4P55283 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC14.82□□□□□ -0.04
CDH4P55283 AP001505.2-201ENST00000616815 443 ntBASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms