Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.46
HOXA1P49639 NR4A1-201ENST00000243050 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
HOXA1P49639 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
HOXA1P49639 DGKZ-216ENST00000528615 2692 ntTSL 5 BASIC12.21□□□□□ -0.46
HOXA1P49639 CACNA1G-226ENST00000513689 6879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
HOXA1P49639 CACNA1G-231ENST00000515165 6870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
HOXA1P49639 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
HOXA1P49639 MCRIP1-212ENST00000576730 2979 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.46
HOXA1P49639 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
HOXA1P49639 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC12.21□□□□□ -0.46
HOXA1P49639 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
HOXA1P49639 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
HOXA1P49639 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC12.21□□□□□ -0.46
HOXA1P49639 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC12.21□□□□□ -0.46
HOXA1P49639 AC110048.1-201ENST00000604293 2157 ntBASIC12.2□□□□□ -0.46
HOXA1P49639 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
HOXA1P49639 NMRAL2P-204ENST00000423298 1792 ntTSL 5 BASIC12.2□□□□□ -0.46
HOXA1P49639 DRD2-210ENST00000544518 2473 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC12.2□□□□□ -0.46
HOXA1P49639 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC12.2□□□□□ -0.46
HOXA1P49639 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 GOLGA6L17P-202ENST00000614358 1398 ntBASIC12.2□□□□□ -0.46
HOXA1P49639 STRA6-206ENST00000449139 2732 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
HOXA1P49639 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 POLDIP3-209ENST00000617178 2006 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 AC015819.3-201ENST00000624305 2674 ntBASIC12.2□□□□□ -0.46
HOXA1P49639 TRIM26-267ENST00000453195 3318 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC12.2□□□□□ -0.46
HOXA1P49639 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 HDAC7-203ENST00000380610 3261 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
HOXA1P49639 FANCC-201ENST00000289081 4585 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 SKA3-202ENST00000314759 2919 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC12.2□□□□□ -0.46
HOXA1P49639 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
HOXA1P49639 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
HOXA1P49639 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 TOMM22P5-201ENST00000416399 439 ntBASIC12.2□□□□□ -0.46
HOXA1P49639 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC12.2□□□□□ -0.46
HOXA1P49639 HLA-V-204ENST00000476601 1289 ntBASIC12.2□□□□□ -0.46
HOXA1P49639 AC004066.1-201ENST00000502488 802 ntBASIC12.2□□□□□ -0.46
HOXA1P49639 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC12.2□□□□□ -0.46
HOXA1P49639 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
HOXA1P49639 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC12.2□□□□□ -0.46
HOXA1P49639 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC12.2□□□□□ -0.46
HOXA1P49639 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 AC051619.7-201ENST00000568314 623 ntBASIC12.2□□□□□ -0.46
HOXA1P49639 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC12.2□□□□□ -0.46
HOXA1P49639 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC12.2□□□□□ -0.46
HOXA1P49639 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC12.2□□□□□ -0.46
HOXA1P49639 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC12.2□□□□□ -0.46
HOXA1P49639 SPDYE12P-201ENST00000618416 771 ntBASIC12.2□□□□□ -0.46
HOXA1P49639 GPER1-207ENST00000619052 571 ntTSL 2 BASIC12.2□□□□□ -0.46
HOXA1P49639 AL109936.8-201ENST00000641772 604 ntBASIC12.2□□□□□ -0.46
HOXA1P49639 ZEB2-204ENST00000409487 5361 ntAPPRIS P2 TSL 5 BASIC12.2□□□□□ -0.46
HOXA1P49639 TOX2-203ENST00000372999 2519 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 SAMD4A-201ENST00000251091 6565 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 CSPG4P11-201ENST00000560634 4910 ntBASIC12.2□□□□□ -0.46
HOXA1P49639 FAM187A-201ENST00000331733 3397 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 CCDC103-204ENST00000417826 3397 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC12.2□□□□□ -0.46
HOXA1P49639 TLK1-202ENST00000360843 5726 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC12.2□□□□□ -0.46
HOXA1P49639 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC12.2□□□□□ -0.46
HOXA1P49639 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC12.2□□□□□ -0.46
HOXA1P49639 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC12.2□□□□□ -0.46
HOXA1P49639 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HOXA1P49639 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC12.2□□□□□ -0.46
HOXA1P49639 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA1P49639 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA1P49639 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA1P49639 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA1P49639 LIPE-201ENST00000244289 3813 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA1P49639 INTS5-201ENST00000330574 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA1P49639 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA1P49639 FES-203ENST00000394302 2133 ntTSL 5 BASIC12.19□□□□□ -0.46
HOXA1P49639 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA1P49639 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA1P49639 NAA15-202ENST00000398947 6072 ntAPPRIS ALT1 TSL 5 BASIC12.19□□□□□ -0.46
HOXA1P49639 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA1P49639 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
HOXA1P49639 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA1P49639 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
HOXA1P49639 OR2I1P-208ENST00000641137 4948 ntBASIC12.19□□□□□ -0.46
HOXA1P49639 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC12.19□□□□□ -0.46
HOXA1P49639 PKIG-203ENST00000372887 769 ntTSL 3 BASIC12.19□□□□□ -0.46
HOXA1P49639 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC12.19□□□□□ -0.46
HOXA1P49639 CENPM-205ENST00000404067 905 ntTSL 3 BASIC12.19□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms