Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 HNRNPC-221ENST00000555883 1182 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
BRCA1P38398 DTWD1-205ENST00000558653 1131 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
BRCA1P38398 AC091132.6-201ENST00000586411 826 ntTSL 5 BASIC16.99■□□□□ 0.31
BRCA1P38398 SEPT14P19-201ENST00000587432 336 ntTSL 2 BASIC16.99■□□□□ 0.31
BRCA1P38398 HIST1H3E-201ENST00000614911 462 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
BRCA1P38398 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
BRCA1P38398 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
BRCA1P38398 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
BRCA1P38398 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
BRCA1P38398 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
BRCA1P38398 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
BRCA1P38398 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
BRCA1P38398 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
BRCA1P38398 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
BRCA1P38398 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
BRCA1P38398 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
BRCA1P38398 LINC00675-202ENST00000581851 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
BRCA1P38398 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
BRCA1P38398 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
BRCA1P38398 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
BRCA1P38398 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
BRCA1P38398 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
BRCA1P38398 ZNF570-202ENST00000586475 1985 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
BRCA1P38398 PLA2G6-210ENST00000435484 612 ntTSL 4 BASIC16.98■□□□□ 0.31
BRCA1P38398 AC078882.1-201ENST00000436132 416 ntTSL 2 BASIC16.98■□□□□ 0.31
BRCA1P38398 AL512288.1-201ENST00000448015 491 ntTSL 5 BASIC16.98■□□□□ 0.31
BRCA1P38398 RN7SL33P-201ENST00000462543 342 ntBASIC16.98■□□□□ 0.31
BRCA1P38398 MYL6-215ENST00000549566 685 ntTSL 2 BASIC16.98■□□□□ 0.31
BRCA1P38398 ZNF850-201ENST00000589390 523 ntTSL 3 BASIC16.98■□□□□ 0.31
BRCA1P38398 AL035427.1-201ENST00000602441 387 ntTSL 3 BASIC16.98■□□□□ 0.31
BRCA1P38398 STAG3L1-204ENST00000619870 1192 ntTSL 2 BASIC16.98■□□□□ 0.31
BRCA1P38398 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
BRCA1P38398 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC16.98■□□□□ 0.31
BRCA1P38398 EDEM2-201ENST00000374491 1756 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
BRCA1P38398 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
BRCA1P38398 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.98■□□□□ 0.31
BRCA1P38398 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
BRCA1P38398 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
BRCA1P38398 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
BRCA1P38398 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
BRCA1P38398 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
BRCA1P38398 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
BRCA1P38398 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
BRCA1P38398 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.98■□□□□ 0.31
BRCA1P38398 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
BRCA1P38398 GOSR2-209ENST00000575949 1444 ntTSL 2 BASIC16.97■□□□□ 0.31
BRCA1P38398 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
BRCA1P38398 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
BRCA1P38398 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.97■□□□□ 0.31
BRCA1P38398 DDC-204ENST00000426377 1700 ntTSL 3 BASIC16.97■□□□□ 0.31
BRCA1P38398 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
BRCA1P38398 LINC00388-201ENST00000412714 663 ntTSL 5 BASIC16.97■□□□□ 0.31
BRCA1P38398 HMGA1P1-201ENST00000415560 1062 ntBASIC16.97■□□□□ 0.31
BRCA1P38398 AC090696.1-201ENST00000419100 418 ntTSL 3 BASIC16.97■□□□□ 0.31
BRCA1P38398 CRIP1P2-201ENST00000425396 228 ntBASIC16.97■□□□□ 0.31
BRCA1P38398 AL359458.1-201ENST00000430821 400 ntTSL 3 BASIC16.97■□□□□ 0.31
BRCA1P38398 AP000959.1-201ENST00000441759 977 ntTSL 3 BASIC16.97■□□□□ 0.31
BRCA1P38398 AL137078.1-201ENST00000446280 404 ntTSL 2 BASIC16.97■□□□□ 0.31
BRCA1P38398 IQSEC2-205ENST00000498281 673 ntTSL 3 BASIC16.97■□□□□ 0.31
BRCA1P38398 UBE2D3-221ENST00000507845 577 ntTSL 4 BASIC16.97■□□□□ 0.31
BRCA1P38398 AC022098.2-201ENST00000590528 518 ntTSL 4 BASIC16.97■□□□□ 0.31
BRCA1P38398 RAB11B-205ENST00000601897 577 ntTSL 3 BASIC16.97■□□□□ 0.31
BRCA1P38398 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
BRCA1P38398 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
BRCA1P38398 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
BRCA1P38398 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC16.97■□□□□ 0.31
BRCA1P38398 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC16.97■□□□□ 0.31
BRCA1P38398 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.97■□□□□ 0.31
BRCA1P38398 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
BRCA1P38398 NR1H4-203ENST00000392986 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
BRCA1P38398 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.97■□□□□ 0.31
BRCA1P38398 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC16.97■□□□□ 0.31
BRCA1P38398 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.97■□□□□ 0.31
BRCA1P38398 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.97■□□□□ 0.31
BRCA1P38398 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
BRCA1P38398 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
BRCA1P38398 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
BRCA1P38398 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.97■□□□□ 0.31
BRCA1P38398 RIDA-201ENST00000254878 1057 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
BRCA1P38398 ECHDC2-201ENST00000358358 1126 ntTSL 2 BASIC16.97■□□□□ 0.31
BRCA1P38398 MRPL55-209ENST00000366735 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
BRCA1P38398 AL357833.1-201ENST00000413993 832 ntTSL 3 BASIC16.97■□□□□ 0.31
BRCA1P38398 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
BRCA1P38398 AP002495.1-205ENST00000529513 655 ntAPPRIS ALT2 TSL 3 BASIC16.97■□□□□ 0.31
BRCA1P38398 AC073896.3-201ENST00000546789 437 ntTSL 5 BASIC16.97■□□□□ 0.31
BRCA1P38398 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC16.97■□□□□ 0.31
BRCA1P38398 HMOX2-213ENST00000575120 1027 ntTSL 3 BASIC16.97■□□□□ 0.31
BRCA1P38398 MIR4326-201ENST00000582203 59 ntBASIC16.97■□□□□ 0.31
BRCA1P38398 RPL26-209ENST00000584164 873 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
BRCA1P38398 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.96■□□□□ 0.31
BRCA1P38398 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
BRCA1P38398 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
BRCA1P38398 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
BRCA1P38398 SERHL2-201ENST00000327678 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
BRCA1P38398 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.96■□□□□ 0.31
BRCA1P38398 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
BRCA1P38398 XRN1-203ENST00000463916 2075 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
BRCA1P38398 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
BRCA1P38398 AL591499.1-201ENST00000307155 1153 ntBASIC16.96■□□□□ 0.31
BRCA1P38398 PPIL3-205ENST00000409449 756 ntTSL 5 BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms