Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
SCN4AP35499 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
SCN4AP35499 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SCN4AP35499 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC16.59■□□□□ 0.25
SCN4AP35499 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SCN4AP35499 RFPL3-201ENST00000249007 1488 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SCN4AP35499 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SCN4AP35499 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SCN4AP35499 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SCN4AP35499 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SCN4AP35499 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SCN4AP35499 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC16.59■□□□□ 0.25
SCN4AP35499 MYADML-201ENST00000474610 2147 ntBASIC16.59■□□□□ 0.25
SCN4AP35499 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC16.59■□□□□ 0.25
SCN4AP35499 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC16.59■□□□□ 0.25
SCN4AP35499 PMM1-201ENST00000216259 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SCN4AP35499 OR6S1-201ENST00000320704 996 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
SCN4AP35499 NANOS3-201ENST00000339133 581 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SCN4AP35499 ECHDC2-201ENST00000358358 1126 ntTSL 2 BASIC16.59■□□□□ 0.25
SCN4AP35499 FTHL17-201ENST00000359202 813 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
SCN4AP35499 NR1I3-201ENST00000367979 1074 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SCN4AP35499 NR1I3-207ENST00000367985 1074 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SCN4AP35499 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC16.59■□□□□ 0.25
SCN4AP35499 LINC01824-201ENST00000436082 528 ntTSL 4 BASIC16.59■□□□□ 0.25
SCN4AP35499 HLA-W-207ENST00000439514 771 ntBASIC16.59■□□□□ 0.25
SCN4AP35499 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC16.59■□□□□ 0.25
SCN4AP35499 NR1I3-225ENST00000508387 634 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SCN4AP35499 AC120498.5-201ENST00000561757 299 ntBASIC16.59■□□□□ 0.25
SCN4AP35499 NAT9-219ENST00000582524 573 ntTSL 4 BASIC16.59■□□□□ 0.25
SCN4AP35499 SRD5A3-AS1-203ENST00000591915 709 ntTSL 5 BASIC16.59■□□□□ 0.25
SCN4AP35499 AL162731.1-201ENST00000613248 876 ntTSL 3 BASIC16.59■□□□□ 0.25
SCN4AP35499 Metazoa_SRP.210-201ENST00000637921 244 ntBASIC16.59■□□□□ 0.25
SCN4AP35499 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
SCN4AP35499 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
SCN4AP35499 MPZL3-204ENST00000527472 1381 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
SCN4AP35499 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC16.58■□□□□ 0.25
SCN4AP35499 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC16.58■□□□□ 0.25
SCN4AP35499 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC16.58■□□□□ 0.25
SCN4AP35499 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
SCN4AP35499 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
SCN4AP35499 RAPGEFL1-202ENST00000456989 1582 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
SCN4AP35499 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
SCN4AP35499 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
SCN4AP35499 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.58■□□□□ 0.24
SCN4AP35499 AC232323.1-201ENST00000540724 2099 ntBASIC16.58■□□□□ 0.24
SCN4AP35499 RNF181-201ENST00000306368 569 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
SCN4AP35499 POP5-201ENST00000341039 913 ntTSL 2 BASIC16.58■□□□□ 0.24
SCN4AP35499 SUMO1-206ENST00000409368 1187 ntTSL 4 BASIC16.58■□□□□ 0.24
SCN4AP35499 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC16.58■□□□□ 0.24
SCN4AP35499 RNF181-203ENST00000441634 844 ntAPPRIS ALT1 TSL 2 BASIC16.58■□□□□ 0.24
SCN4AP35499 AC113398.1-201ENST00000464124 406 ntBASIC16.58■□□□□ 0.24
SCN4AP35499 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SCN4AP35499 CETN3-205ENST00000522842 664 ntTSL 2 BASIC16.58■□□□□ 0.24
SCN4AP35499 OR4A49P-201ENST00000527050 632 ntBASIC16.58■□□□□ 0.24
SCN4AP35499 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC16.58■□□□□ 0.24
SCN4AP35499 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
SCN4AP35499 MST1L-204ENST00000545160 559 ntTSL 4 BASIC16.58■□□□□ 0.24
SCN4AP35499 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC16.58■□□□□ 0.24
SCN4AP35499 AC010202.1-201ENST00000551181 405 ntBASIC16.58■□□□□ 0.24
SCN4AP35499 CDC37P2-201ENST00000562287 1029 ntBASIC16.58■□□□□ 0.24
SCN4AP35499 AC091132.6-201ENST00000586411 826 ntTSL 5 BASIC16.58■□□□□ 0.24
SCN4AP35499 SRP19-208ENST00000621420 1270 ntTSL 3 BASIC16.58■□□□□ 0.24
SCN4AP35499 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC16.58■□□□□ 0.24
SCN4AP35499 TTN-AS1-264ENST00000627564 1319 ntTSL 5 BASIC16.58■□□□□ 0.24
SCN4AP35499 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SCN4AP35499 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SCN4AP35499 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SCN4AP35499 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SCN4AP35499 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
SCN4AP35499 AC011270.2-201ENST00000624293 2550 ntBASIC16.58■□□□□ 0.24
SCN4AP35499 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.58■□□□□ 0.24
SCN4AP35499 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SCN4AP35499 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SCN4AP35499 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.57■□□□□ 0.24
SCN4AP35499 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SCN4AP35499 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
SCN4AP35499 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SCN4AP35499 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
SCN4AP35499 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
SCN4AP35499 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
SCN4AP35499 CCL24-201ENST00000222902 582 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SCN4AP35499 RIDA-201ENST00000254878 1057 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SCN4AP35499 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
SCN4AP35499 TAMM41-201ENST00000273037 1297 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SCN4AP35499 CSRP2-201ENST00000311083 943 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SCN4AP35499 TAC4-203ENST00000352793 564 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SCN4AP35499 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
SCN4AP35499 SNU13-204ENST00000402458 462 ntTSL 3 BASIC16.57■□□□□ 0.24
SCN4AP35499 HMGA1P2-201ENST00000430198 324 ntBASIC16.57■□□□□ 0.24
SCN4AP35499 AL021391.1-201ENST00000454439 545 ntTSL 4 BASIC16.57■□□□□ 0.24
SCN4AP35499 AC022784.6-202ENST00000523246 674 ntTSL 5 BASIC16.57■□□□□ 0.24
SCN4AP35499 CSRP2-203ENST00000547435 632 ntTSL 2 BASIC16.57■□□□□ 0.24
SCN4AP35499 AC004584.1-201ENST00000572187 549 ntTSL 3 BASIC16.57■□□□□ 0.24
SCN4AP35499 Metazoa_SRP.173-201ENST00000614020 273 ntBASIC16.57■□□□□ 0.24
SCN4AP35499 COG6-212ENST00000630730 186 ntTSL 5 BASIC16.57■□□□□ 0.24
SCN4AP35499 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SCN4AP35499 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SCN4AP35499 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
SCN4AP35499 AC104640.1-201ENST00000562617 2109 ntBASIC16.57■□□□□ 0.24
SCN4AP35499 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms