Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 HNRNPA1P56-201ENST00000505767 954 ntBASIC17.65■□□□□ 0.42
COL5A3P25940 SEPT14P19-201ENST00000587432 336 ntTSL 2 BASIC17.65■□□□□ 0.42
COL5A3P25940 PRKACA-208ENST00000589994 1127 ntTSL 2 BASIC17.65■□□□□ 0.42
COL5A3P25940 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
COL5A3P25940 CR392039.1-201ENST00000623217 204 ntBASIC17.65■□□□□ 0.42
COL5A3P25940 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A3P25940 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A3P25940 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
COL5A3P25940 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A3P25940 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC17.65■□□□□ 0.42
COL5A3P25940 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A3P25940 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A3P25940 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A3P25940 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A3P25940 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
COL5A3P25940 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A3P25940 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A3P25940 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
COL5A3P25940 FES-204ENST00000414248 2327 ntTSL 2 BASIC17.64■□□□□ 0.42
COL5A3P25940 RIDA-201ENST00000254878 1057 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A3P25940 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A3P25940 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC17.64■□□□□ 0.41
COL5A3P25940 AL512288.1-201ENST00000448015 491 ntTSL 5 BASIC17.64■□□□□ 0.41
COL5A3P25940 AC022274.1-201ENST00000467082 490 ntTSL 5 BASIC17.64■□□□□ 0.41
COL5A3P25940 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC17.64■□□□□ 0.41
COL5A3P25940 IFI27L1-212ENST00000557218 413 ntTSL 3 BASIC17.64■□□□□ 0.41
COL5A3P25940 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC17.64■□□□□ 0.41
COL5A3P25940 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
COL5A3P25940 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A3P25940 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A3P25940 AC103702.1-201ENST00000548801 2630 ntBASIC17.64■□□□□ 0.41
COL5A3P25940 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
COL5A3P25940 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC17.64■□□□□ 0.41
COL5A3P25940 AC089987.1-201ENST00000551654 2209 ntBASIC17.64■□□□□ 0.41
COL5A3P25940 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
COL5A3P25940 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A3P25940 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A3P25940 AC024075.2-201ENST00000598112 1473 ntBASIC17.64■□□□□ 0.41
COL5A3P25940 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
COL5A3P25940 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A3P25940 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
COL5A3P25940 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A3P25940 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
COL5A3P25940 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
COL5A3P25940 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A3P25940 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A3P25940 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A3P25940 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A3P25940 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A3P25940 BPIFA4P-201ENST00000375465 1203 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A3P25940 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC17.64■□□□□ 0.41
COL5A3P25940 AL121656.1-201ENST00000440786 482 ntTSL 5 BASIC17.64■□□□□ 0.41
COL5A3P25940 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A3P25940 BCL2L12P1-201ENST00000508390 733 ntBASIC17.64■□□□□ 0.41
COL5A3P25940 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC17.64■□□□□ 0.41
COL5A3P25940 WNT5B-206ENST00000542408 508 ntTSL 3 BASIC17.64■□□□□ 0.41
COL5A3P25940 AC091304.3-201ENST00000566500 716 ntBASIC17.64■□□□□ 0.41
COL5A3P25940 AC019294.2-203ENST00000569596 594 ntTSL 3 BASIC17.64■□□□□ 0.41
COL5A3P25940 LINC01836-201ENST00000586061 829 ntTSL 3 BASIC17.64■□□□□ 0.41
COL5A3P25940 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC17.64■□□□□ 0.41
COL5A3P25940 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC17.64■□□□□ 0.41
COL5A3P25940 ZNF677-210ENST00000601413 706 ntTSL 2 BASIC17.64■□□□□ 0.41
COL5A3P25940 AL162731.1-201ENST00000613248 876 ntTSL 3 BASIC17.64■□□□□ 0.41
COL5A3P25940 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL5A3P25940 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
COL5A3P25940 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC17.63■□□□□ 0.41
COL5A3P25940 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL5A3P25940 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL5A3P25940 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL5A3P25940 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
COL5A3P25940 HSPA8P5-201ENST00000456928 2069 ntBASIC17.63■□□□□ 0.41
COL5A3P25940 SELENBP1-208ENST00000447402 1530 ntTSL 2 BASIC17.63■□□□□ 0.41
COL5A3P25940 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL5A3P25940 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC17.63■□□□□ 0.41
COL5A3P25940 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
COL5A3P25940 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC17.63■□□□□ 0.41
COL5A3P25940 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
COL5A3P25940 OR2T8-201ENST00000319968 939 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
COL5A3P25940 TXNL4B-203ENST00000426362 965 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
COL5A3P25940 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC17.63■□□□□ 0.41
COL5A3P25940 SRPK2P-201ENST00000523408 1100 ntBASIC17.63■□□□□ 0.41
COL5A3P25940 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL5A3P25940 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL5A3P25940 TCL1A-209ENST00000557043 980 ntTSL 3 BASIC17.63■□□□□ 0.41
COL5A3P25940 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC17.63■□□□□ 0.41
COL5A3P25940 AC005746.3-201ENST00000614751 393 ntBASIC17.63■□□□□ 0.41
COL5A3P25940 OR2T8-202ENST00000641945 1226 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
COL5A3P25940 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC17.63■□□□□ 0.41
COL5A3P25940 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL5A3P25940 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
COL5A3P25940 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL5A3P25940 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC17.63■□□□□ 0.41
COL5A3P25940 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL5A3P25940 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL5A3P25940 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
COL5A3P25940 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL5A3P25940 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL5A3P25940 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC17.62■□□□□ 0.41
COL5A3P25940 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
COL5A3P25940 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms