Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC13.41□□□□□ -0.26
NKX2-2O95096 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
NKX2-2O95096 AC041040.2-201ENST00000622926 2899 ntBASIC13.41□□□□□ -0.26
NKX2-2O95096 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
NKX2-2O95096 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
NKX2-2O95096 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-2O95096 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-2O95096 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
NKX2-2O95096 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC13.41□□□□□ -0.26
NKX2-2O95096 HNRNPA1P63-201ENST00000427917 963 ntBASIC13.41□□□□□ -0.26
NKX2-2O95096 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC13.41□□□□□ -0.26
NKX2-2O95096 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC13.41□□□□□ -0.26
NKX2-2O95096 AC021723.1-201ENST00000486306 515 ntBASIC13.41□□□□□ -0.26
NKX2-2O95096 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC13.41□□□□□ -0.26
NKX2-2O95096 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-2O95096 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC13.41□□□□□ -0.26
NKX2-2O95096 CD74-212ENST00000524315 584 ntTSL 5 BASIC13.41□□□□□ -0.26
NKX2-2O95096 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC13.41□□□□□ -0.26
NKX2-2O95096 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC13.41□□□□□ -0.26
NKX2-2O95096 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC13.41□□□□□ -0.26
NKX2-2O95096 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC13.41□□□□□ -0.26
NKX2-2O95096 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC13.41□□□□□ -0.26
NKX2-2O95096 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC13.41□□□□□ -0.26
NKX2-2O95096 NAA38-206ENST00000576384 424 ntTSL 2 BASIC13.41□□□□□ -0.26
NKX2-2O95096 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC13.41□□□□□ -0.26
NKX2-2O95096 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC13.41□□□□□ -0.26
NKX2-2O95096 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-2O95096 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC13.41□□□□□ -0.26
NKX2-2O95096 TECR-220ENST00000600083 1204 ntTSL 2 BASIC13.41□□□□□ -0.26
NKX2-2O95096 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-2O95096 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
NKX2-2O95096 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-2O95096 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-2O95096 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-2O95096 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-2O95096 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-2O95096 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
NKX2-2O95096 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
NKX2-2O95096 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-2O95096 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-2O95096 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-2O95096 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
NKX2-2O95096 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
NKX2-2O95096 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-2O95096 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC13.41□□□□□ -0.26
NKX2-2O95096 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
NKX2-2O95096 MBLAC2-202ENST00000514906 1936 ntBASIC13.41□□□□□ -0.26
NKX2-2O95096 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC13.41□□□□□ -0.26
NKX2-2O95096 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-2O95096 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-2O95096 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
NKX2-2O95096 TUBB1P2-201ENST00000422712 1306 ntBASIC13.4□□□□□ -0.26
NKX2-2O95096 TUBB1P1-201ENST00000503144 1300 ntBASIC13.4□□□□□ -0.26
NKX2-2O95096 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
NKX2-2O95096 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
NKX2-2O95096 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
NKX2-2O95096 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC13.4□□□□□ -0.26
NKX2-2O95096 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
NKX2-2O95096 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
NKX2-2O95096 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
NKX2-2O95096 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC13.4□□□□□ -0.26
NKX2-2O95096 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
NKX2-2O95096 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
NKX2-2O95096 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC13.4□□□□□ -0.26
NKX2-2O95096 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
NKX2-2O95096 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
NKX2-2O95096 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
NKX2-2O95096 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
NKX2-2O95096 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
NKX2-2O95096 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
NKX2-2O95096 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
NKX2-2O95096 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC13.4□□□□□ -0.26
NKX2-2O95096 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
NKX2-2O95096 SMS-201ENST00000379404 1174 ntTSL 3 BASIC13.4□□□□□ -0.26
NKX2-2O95096 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
NKX2-2O95096 POM121L10P-201ENST00000436994 1285 ntBASIC13.4□□□□□ -0.26
NKX2-2O95096 AC022217.1-201ENST00000521069 738 ntBASIC13.4□□□□□ -0.26
NKX2-2O95096 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC13.4□□□□□ -0.26
NKX2-2O95096 AGER-214ENST00000538695 487 ntTSL 2 BASIC13.4□□□□□ -0.26
NKX2-2O95096 RIT1-205ENST00000539040 919 ntTSL 2 BASIC13.4□□□□□ -0.26
NKX2-2O95096 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC13.4□□□□□ -0.26
NKX2-2O95096 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC13.4□□□□□ -0.26
NKX2-2O95096 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC13.4□□□□□ -0.26
NKX2-2O95096 Six3os1_5.1-201ENST00000611000 271 ntBASIC13.4□□□□□ -0.26
NKX2-2O95096 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
NKX2-2O95096 AC090386.2-201ENST00000623010 1039 ntBASIC13.4□□□□□ -0.26
NKX2-2O95096 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
NKX2-2O95096 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
NKX2-2O95096 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC13.4□□□□□ -0.26
NKX2-2O95096 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC13.4□□□□□ -0.26
NKX2-2O95096 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC13.4□□□□□ -0.26
NKX2-2O95096 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
NKX2-2O95096 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC13.4□□□□□ -0.26
NKX2-2O95096 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
NKX2-2O95096 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC13.4□□□□□ -0.26
NKX2-2O95096 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
NKX2-2O95096 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC13.4□□□□□ -0.26
NKX2-2O95096 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
NKX2-2O95096 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
NKX2-2O95096 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC13.4□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms