Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ANKRD36B-201ENST00000258459 5986 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
HMGB3O15347 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HMGB3O15347 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HMGB3O15347 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HMGB3O15347 KRIT1-201ENST00000340022 4553 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HMGB3O15347 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
HMGB3O15347 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HMGB3O15347 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HMGB3O15347 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HMGB3O15347 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HMGB3O15347 MKX-201ENST00000375790 3846 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HMGB3O15347 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC11.79□□□□□ -0.52
HMGB3O15347 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
HMGB3O15347 BAIAP3-203ENST00000421665 3875 ntTSL 2 BASIC11.79□□□□□ -0.52
HMGB3O15347 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HMGB3O15347 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
HMGB3O15347 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC11.79□□□□□ -0.52
HMGB3O15347 TTC30A-201ENST00000355689 5975 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
HMGB3O15347 ABCA8-208ENST00000586539 5088 ntAPPRIS P4 TSL 1 (best) BASIC11.79□□□□□ -0.52
HMGB3O15347 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
HMGB3O15347 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC11.78□□□□□ -0.52
HMGB3O15347 PAX8-203ENST00000348715 3966 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HMGB3O15347 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
HMGB3O15347 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HMGB3O15347 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
HMGB3O15347 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
HMGB3O15347 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HMGB3O15347 LAMB1-204ENST00000393561 5766 ntTSL 5 BASIC11.78□□□□□ -0.52
HMGB3O15347 SCN5A-204ENST00000414099 8303 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HMGB3O15347 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
HMGB3O15347 AC068760.1-201ENST00000493579 1953 ntBASIC11.78□□□□□ -0.52
HMGB3O15347 RAB3D-201ENST00000222120 4273 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HMGB3O15347 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC11.78□□□□□ -0.52
HMGB3O15347 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HMGB3O15347 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
HMGB3O15347 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC11.78□□□□□ -0.52
HMGB3O15347 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
HMGB3O15347 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC11.78□□□□□ -0.52
HMGB3O15347 AC015818.8-201ENST00000587907 1519 ntBASIC11.78□□□□□ -0.52
HMGB3O15347 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
HMGB3O15347 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HMGB3O15347 BEX3-201ENST00000361298 921 ntTSL 2 BASIC11.78□□□□□ -0.52
HMGB3O15347 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HMGB3O15347 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HMGB3O15347 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC11.78□□□□□ -0.52
HMGB3O15347 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC11.78□□□□□ -0.52
HMGB3O15347 PTK7-212ENST00000476760 902 ntTSL 2 BASIC11.78□□□□□ -0.52
HMGB3O15347 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HMGB3O15347 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC11.78□□□□□ -0.52
HMGB3O15347 BANF1P1-201ENST00000553684 263 ntBASIC11.78□□□□□ -0.52
HMGB3O15347 LINC01225-203ENST00000563550 1244 ntBASIC11.78□□□□□ -0.52
HMGB3O15347 SAMD11P1-201ENST00000571429 661 ntBASIC11.78□□□□□ -0.52
HMGB3O15347 AP001005.1-201ENST00000571755 1248 ntBASIC11.78□□□□□ -0.52
HMGB3O15347 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HMGB3O15347 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC11.78□□□□□ -0.52
HMGB3O15347 AL691432.3-201ENST00000621860 400 ntBASIC11.78□□□□□ -0.52
HMGB3O15347 AF228730.6-201ENST00000641497 218 ntBASIC11.78□□□□□ -0.52
HMGB3O15347 AC084121.3-201ENST00000641716 218 ntBASIC11.78□□□□□ -0.52
HMGB3O15347 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC11.78□□□□□ -0.52
HMGB3O15347 PEX1-201ENST00000248633 4385 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HMGB3O15347 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC11.78□□□□□ -0.52
HMGB3O15347 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HMGB3O15347 RNF115-202ENST00000582693 9117 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HMGB3O15347 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HMGB3O15347 ADGRA1-201ENST00000392606 3438 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HMGB3O15347 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HMGB3O15347 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HMGB3O15347 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC11.78□□□□□ -0.52
HMGB3O15347 AL360270.3-201ENST00000609118 1348 ntBASIC11.78□□□□□ -0.52
HMGB3O15347 URB2-201ENST00000258243 5613 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HMGB3O15347 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HMGB3O15347 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC11.78□□□□□ -0.52
HMGB3O15347 CROT-203ENST00000419147 2959 ntTSL 2 BASIC11.78□□□□□ -0.52
HMGB3O15347 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
HMGB3O15347 SCN8A-208ENST00000599343 5976 ntAPPRIS ALT1 TSL 5 BASIC11.78□□□□□ -0.52
HMGB3O15347 SETD7-201ENST00000274031 7365 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HMGB3O15347 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC11.78□□□□□ -0.52
HMGB3O15347 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC11.78□□□□□ -0.52
HMGB3O15347 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC11.78□□□□□ -0.52
HMGB3O15347 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC11.78□□□□□ -0.52
HMGB3O15347 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
HMGB3O15347 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
HMGB3O15347 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC11.77□□□□□ -0.52
HMGB3O15347 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HMGB3O15347 AC020910.6-201ENST00000623084 1459 ntBASIC11.77□□□□□ -0.52
HMGB3O15347 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
HMGB3O15347 MADD-210ENST00000407859 5744 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
HMGB3O15347 ARHGAP33-204ENST00000378944 4219 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.52
HMGB3O15347 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HMGB3O15347 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HMGB3O15347 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC11.77□□□□□ -0.52
HMGB3O15347 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.53
HMGB3O15347 AL591122.2-201ENST00000624125 1853 ntBASIC11.77□□□□□ -0.53
HMGB3O15347 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC11.77□□□□□ -0.53
HMGB3O15347 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HMGB3O15347 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HMGB3O15347 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC11.77□□□□□ -0.53
HMGB3O15347 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC11.77□□□□□ -0.53
HMGB3O15347 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HMGB3O15347 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms