Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CISHQ9NSE2 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CISHQ9NSE2 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC15.51■□□□□ 0.07
CISHQ9NSE2 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CISHQ9NSE2 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CISHQ9NSE2 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
CISHQ9NSE2 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CISHQ9NSE2 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CISHQ9NSE2 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CISHQ9NSE2 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CISHQ9NSE2 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC15.51■□□□□ 0.07
CISHQ9NSE2 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CISHQ9NSE2 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CISHQ9NSE2 FAM86MP-201ENST00000340703 885 ntBASIC15.51■□□□□ 0.07
CISHQ9NSE2 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CISHQ9NSE2 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC15.51■□□□□ 0.07
CISHQ9NSE2 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
CISHQ9NSE2 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC15.51■□□□□ 0.07
CISHQ9NSE2 AC104073.2-201ENST00000453737 312 ntBASIC15.51■□□□□ 0.07
CISHQ9NSE2 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
CISHQ9NSE2 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC15.51■□□□□ 0.07
CISHQ9NSE2 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC15.51■□□□□ 0.07
CISHQ9NSE2 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC15.51■□□□□ 0.07
CISHQ9NSE2 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC15.51■□□□□ 0.07
CISHQ9NSE2 AC003686.1-201ENST00000550956 1034 ntBASIC15.51■□□□□ 0.07
CISHQ9NSE2 EID1-202ENST00000560490 584 ntTSL 3 BASIC15.51■□□□□ 0.07
CISHQ9NSE2 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC15.51■□□□□ 0.07
CISHQ9NSE2 AL118558.3-201ENST00000607414 1079 ntBASIC15.51■□□□□ 0.07
CISHQ9NSE2 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
CISHQ9NSE2 AC068587.8-201ENST00000641239 219 ntBASIC15.51■□□□□ 0.07
CISHQ9NSE2 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CISHQ9NSE2 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CISHQ9NSE2 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.51■□□□□ 0.07
CISHQ9NSE2 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CISHQ9NSE2 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CISHQ9NSE2 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CISHQ9NSE2 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
CISHQ9NSE2 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CISHQ9NSE2 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC15.51■□□□□ 0.07
CISHQ9NSE2 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CISHQ9NSE2 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CISHQ9NSE2 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CISHQ9NSE2 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC15.51■□□□□ 0.07
CISHQ9NSE2 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
CISHQ9NSE2 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC15.5■□□□□ 0.07
CISHQ9NSE2 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CISHQ9NSE2 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
CISHQ9NSE2 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CISHQ9NSE2 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CISHQ9NSE2 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CISHQ9NSE2 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CISHQ9NSE2 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CISHQ9NSE2 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC15.5■□□□□ 0.07
CISHQ9NSE2 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC15.5■□□□□ 0.07
CISHQ9NSE2 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CISHQ9NSE2 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CISHQ9NSE2 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CISHQ9NSE2 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
CISHQ9NSE2 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CISHQ9NSE2 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CISHQ9NSE2 DPM3-202ENST00000368399 517 ntBASIC15.5■□□□□ 0.07
CISHQ9NSE2 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CISHQ9NSE2 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
CISHQ9NSE2 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CISHQ9NSE2 SERPINA13P-202ENST00000478994 924 ntBASIC15.5■□□□□ 0.07
CISHQ9NSE2 AC092658.1-201ENST00000505836 891 ntBASIC15.5■□□□□ 0.07
CISHQ9NSE2 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC15.5■□□□□ 0.07
CISHQ9NSE2 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC15.5■□□□□ 0.07
CISHQ9NSE2 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
CISHQ9NSE2 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC15.5■□□□□ 0.07
CISHQ9NSE2 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC15.5■□□□□ 0.07
CISHQ9NSE2 AC124068.2-201ENST00000569473 1109 ntBASIC15.5■□□□□ 0.07
CISHQ9NSE2 MIR4538-201ENST00000581377 78 ntBASIC15.5■□□□□ 0.07
CISHQ9NSE2 RN7SL163P-201ENST00000583100 276 ntBASIC15.5■□□□□ 0.07
CISHQ9NSE2 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CISHQ9NSE2 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CISHQ9NSE2 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC15.5■□□□□ 0.07
CISHQ9NSE2 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CISHQ9NSE2 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CISHQ9NSE2 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CISHQ9NSE2 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC15.5■□□□□ 0.07
CISHQ9NSE2 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
CISHQ9NSE2 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CISHQ9NSE2 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CISHQ9NSE2 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC15.5■□□□□ 0.07
CISHQ9NSE2 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CISHQ9NSE2 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CISHQ9NSE2 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC15.5■□□□□ 0.07
CISHQ9NSE2 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CISHQ9NSE2 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CISHQ9NSE2 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CISHQ9NSE2 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CISHQ9NSE2 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CISHQ9NSE2 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CISHQ9NSE2 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC15.49■□□□□ 0.07
CISHQ9NSE2 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
CISHQ9NSE2 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CISHQ9NSE2 GOLGA8VP-201ENST00000559009 1798 ntBASIC15.49■□□□□ 0.07
CISHQ9NSE2 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
CISHQ9NSE2 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms