Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 AGK-211ENST00000629555 2765 ntTSL 5 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 PPP1R7-205ENST00000404405 1009 ntTSL 3 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 RPL10-203ENST00000406022 748 ntTSL 3 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 HIST1H2APS2-201ENST00000454426 370 ntBASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 AC078852.1-201ENST00000515842 441 ntTSL 3 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 AP004550.1-201ENST00000532652 514 ntTSL 3 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 AP005899.1-201ENST00000579467 544 ntTSL 3 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SHANK3Q9BYB0 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.5
SHANK3Q9BYB0 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SHANK3Q9BYB0 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC18.14■□□□□ 0.5
SHANK3Q9BYB0 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 AC089987.1-201ENST00000551654 2209 ntBASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 CCL25-202ENST00000315626 450 ntTSL 2 BASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 NHP2P1-201ENST00000335274 462 ntBASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 U73169.1-201ENST00000395152 367 ntBASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 HFE-209ENST00000461397 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 AC092612.1-201ENST00000514501 998 ntBASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 IFI27L1-212ENST00000557218 413 ntTSL 3 BASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 HNRNPA1P16-201ENST00000575692 955 ntBASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 KRT8P34-201ENST00000577607 1044 ntBASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 Metazoa_SRP.63-201ENST00000617144 298 ntBASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SHANK3Q9BYB0 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 PRR23A-201ENST00000383163 801 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 PHBP10-201ENST00000416467 784 ntBASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 RPL18AP16-201ENST00000424057 531 ntBASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 RPSAP12-201ENST00000435879 888 ntBASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 BCL2L12P1-201ENST00000508390 733 ntBASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 RNA5SP420-201ENST00000516997 137 ntBASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 BAK1P2-201ENST00000532665 631 ntBASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 AL162731.1-201ENST00000613248 876 ntTSL 3 BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 MIR8071-1-201ENST00000616769 65 ntBASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 MIR8071-2-201ENST00000616772 65 ntBASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 HSPA8P5-201ENST00000456928 2069 ntBASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 PSMC5-201ENST00000310144 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms