Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
VPS13AQ96RL7 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
VPS13AQ96RL7 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
VPS13AQ96RL7 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VPS13AQ96RL7 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC13.96□□□□□ -0.17
VPS13AQ96RL7 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VPS13AQ96RL7 CELA3A-202ENST00000374663 649 ntTSL 2 BASIC13.96□□□□□ -0.17
VPS13AQ96RL7 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC13.96□□□□□ -0.17
VPS13AQ96RL7 KCNMA1-AS1-201ENST00000426234 863 ntTSL 5 BASIC13.96□□□□□ -0.17
VPS13AQ96RL7 SAP18P2-201ENST00000434334 459 ntBASIC13.96□□□□□ -0.17
VPS13AQ96RL7 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC13.96□□□□□ -0.17
VPS13AQ96RL7 AC026336.4-201ENST00000624565 1050 ntBASIC13.96□□□□□ -0.17
VPS13AQ96RL7 AC009093.10-201ENST00000641956 1442 ntBASIC13.96□□□□□ -0.17
VPS13AQ96RL7 WNT8A-202ENST00000398754 1498 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VPS13AQ96RL7 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
VPS13AQ96RL7 AL365203.3-201ENST00000609742 2057 ntBASIC13.96□□□□□ -0.17
VPS13AQ96RL7 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC13.96□□□□□ -0.17
VPS13AQ96RL7 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
VPS13AQ96RL7 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC13.96□□□□□ -0.17
VPS13AQ96RL7 BANP-204ENST00000393208 2283 ntTSL 2 BASIC13.96□□□□□ -0.17
VPS13AQ96RL7 ACE3P-201ENST00000423435 1973 ntBASIC13.96□□□□□ -0.17
VPS13AQ96RL7 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
VPS13AQ96RL7 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC13.96□□□□□ -0.17
VPS13AQ96RL7 AC097359.2-201ENST00000604992 2389 ntBASIC13.96□□□□□ -0.17
VPS13AQ96RL7 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
VPS13AQ96RL7 MIR611-201ENST00000384869 67 ntBASIC13.96□□□□□ -0.17
VPS13AQ96RL7 RN7SL340P-201ENST00000470792 296 ntBASIC13.96□□□□□ -0.17
VPS13AQ96RL7 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC13.96□□□□□ -0.17
VPS13AQ96RL7 AC093300.1-201ENST00000510368 1201 ntBASIC13.96□□□□□ -0.17
VPS13AQ96RL7 SPRY4-AS1-206ENST00000515288 539 ntTSL 2 BASIC13.96□□□□□ -0.17
VPS13AQ96RL7 AC132812.1-201ENST00000583145 892 ntBASIC13.96□□□□□ -0.17
VPS13AQ96RL7 AC005746.2-201ENST00000585765 470 ntTSL 5 BASIC13.96□□□□□ -0.17
VPS13AQ96RL7 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
VPS13AQ96RL7 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.18
VPS13AQ96RL7 FAM9B-201ENST00000327220 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
VPS13AQ96RL7 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
VPS13AQ96RL7 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
VPS13AQ96RL7 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
VPS13AQ96RL7 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
VPS13AQ96RL7 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
VPS13AQ96RL7 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC13.96□□□□□ -0.18
VPS13AQ96RL7 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.18
VPS13AQ96RL7 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
VPS13AQ96RL7 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
VPS13AQ96RL7 AC011284.1-201ENST00000427920 856 ntTSL 4 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 HNRNPA3P6-201ENST00000472163 1006 ntBASIC13.95□□□□□ -0.18
VPS13AQ96RL7 ZNF235-203ENST00000589248 532 ntTSL 3 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 ZNF143-202ENST00000396597 1954 ntTSL 2 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 PDE4DIP-202ENST00000369347 1137 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 LINP1-201ENST00000417112 917 ntTSL 2 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 RIC3-205ENST00000425599 867 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC13.95□□□□□ -0.18
VPS13AQ96RL7 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 KRTAP12-2-201ENST00000360770 739 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 WDR54-202ENST00000409791 854 ntTSL 3 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 AC079325.1-201ENST00000430386 857 ntBASIC13.95□□□□□ -0.18
VPS13AQ96RL7 AL353653.1-201ENST00000452336 638 ntTSL 2 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 CRYAB-213ENST00000533475 1119 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 AL031056.1-202ENST00000635954 2193 ntTSL 5 BASIC13.95□□□□□ -0.18
VPS13AQ96RL7 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 OR7E12P-201ENST00000344740 973 ntBASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms