Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 COQ4-204ENST00000608951 781 ntTSL 2 BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 Metazoa_SRP.156-201ENST00000622344 262 ntBASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 APOBEC3A-201ENST00000249116 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 SEC13-209ENST00000397117 1603 ntTSL 5 BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 NQO2-204ENST00000380454 851 ntTSL 2 BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 ATP5J-204ENST00000400093 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 SMIM15-202ENST00000507416 584 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 ISL1-203ENST00000511384 981 ntTSL 5 BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 AC011431.1-201ENST00000512971 230 ntBASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 AC011676.3-201ENST00000520606 294 ntTSL 5 BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 AP003785.1-201ENST00000544959 492 ntTSL 4 BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 AP005264.5-201ENST00000590066 467 ntBASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 MIR6893-201ENST00000613458 69 ntBASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 OR3A1-202ENST00000615105 966 ntBASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 SRP19-208ENST00000621420 1270 ntTSL 3 BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 AC005274.1-201ENST00000623460 802 ntBASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 TSPY26P-202ENST00000565928 3884 ntBASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 AGGF1P1-201ENST00000509500 2073 ntBASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.09■□□□□ 0.33
SMC1BQ8NDV3 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
SMC1BQ8NDV3 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SMC1BQ8NDV3 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SMC1BQ8NDV3 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.08■□□□□ 0.33
SMC1BQ8NDV3 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SMC1BQ8NDV3 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
SMC1BQ8NDV3 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SMC1BQ8NDV3 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
SMC1BQ8NDV3 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC17.08■□□□□ 0.33
SMC1BQ8NDV3 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.08■□□□□ 0.33
SMC1BQ8NDV3 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
SMC1BQ8NDV3 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
SMC1BQ8NDV3 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC17.08■□□□□ 0.33
SMC1BQ8NDV3 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 AC009093.10-201ENST00000641956 1442 ntBASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 C22orf42-201ENST00000382097 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 MSANTD2P1-201ENST00000445341 1368 ntBASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 ECHDC2-201ENST00000358358 1126 ntTSL 2 BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 BAX-205ENST00000391871 687 ntTSL 5 BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 RN7SL672P-201ENST00000474091 317 ntBASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 HNRNPA1P56-201ENST00000505767 954 ntBASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 AC087203.1-201ENST00000532111 1181 ntBASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 ACTBP9-201ENST00000587663 1099 ntBASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 FCGR3A-208ENST00000638849 873 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms