Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 BANF1P3-201ENST00000412556 261 ntBASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 RPL8P2-201ENST00000430538 502 ntBASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 RN7SL530P-201ENST00000485097 298 ntBASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 AC008723.1-201ENST00000506922 207 ntBASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 CD164-210ENST00000512821 964 ntTSL 2 BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 AC093752.3-201ENST00000567343 901 ntBASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 LINC00552-201ENST00000625151 2579 ntBASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 FAM90A2P-201ENST00000511144 1395 ntBASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 FAM90A25P-201ENST00000528404 1395 ntBASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC60Q8IWA6 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 RPS9P1-201ENST00000419943 583 ntBASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 DUX4L50-201ENST00000455245 715 ntBASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 NAT9-220ENST00000582870 896 ntTSL 5 BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 AC015656.1-201ENST00000624209 3578 ntBASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC60Q8IWA6 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC60Q8IWA6 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC16.09■□□□□ 0.17
CCDC60Q8IWA6 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC60Q8IWA6 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC60Q8IWA6 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC16.09■□□□□ 0.17
CCDC60Q8IWA6 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC60Q8IWA6 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.09■□□□□ 0.17
CCDC60Q8IWA6 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.09■□□□□ 0.17
CCDC60Q8IWA6 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
CCDC60Q8IWA6 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
CCDC60Q8IWA6 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC60Q8IWA6 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC16.09■□□□□ 0.17
CCDC60Q8IWA6 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC16.09■□□□□ 0.17
CCDC60Q8IWA6 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CCDC60Q8IWA6 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC60Q8IWA6 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC16.09■□□□□ 0.17
CCDC60Q8IWA6 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC60Q8IWA6 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC60Q8IWA6 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC16.09■□□□□ 0.17
CCDC60Q8IWA6 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC16.09■□□□□ 0.17
CCDC60Q8IWA6 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms