Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SOX3P41225 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
SOX3P41225 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
SOX3P41225 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
SOX3P41225 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC13.82□□□□□ -0.2
SOX3P41225 CICP8-201ENST00000455800 2813 ntBASIC13.82□□□□□ -0.2
SOX3P41225 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
SOX3P41225 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
SOX3P41225 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SOX3P41225 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC13.81□□□□□ -0.2
SOX3P41225 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SOX3P41225 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SOX3P41225 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SOX3P41225 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC13.81□□□□□ -0.2
SOX3P41225 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC13.81□□□□□ -0.2
SOX3P41225 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SOX3P41225 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
SOX3P41225 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
SOX3P41225 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SOX3P41225 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
SOX3P41225 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC13.81□□□□□ -0.2
SOX3P41225 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SOX3P41225 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC13.81□□□□□ -0.2
SOX3P41225 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
SOX3P41225 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC13.81□□□□□ -0.2
SOX3P41225 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SOX3P41225 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC13.81□□□□□ -0.2
SOX3P41225 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
SOX3P41225 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SOX3P41225 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
SOX3P41225 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SOX3P41225 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SOX3P41225 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SOX3P41225 MIR326-201ENST00000362220 95 ntBASIC13.81□□□□□ -0.2
SOX3P41225 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SOX3P41225 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
SOX3P41225 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC13.81□□□□□ -0.2
SOX3P41225 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC13.81□□□□□ -0.2
SOX3P41225 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC13.81□□□□□ -0.2
SOX3P41225 USB1-203ENST00000539737 1212 ntTSL 2 BASIC13.81□□□□□ -0.2
SOX3P41225 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC13.81□□□□□ -0.2
SOX3P41225 DERL2-202ENST00000570848 657 ntTSL 5 BASIC13.81□□□□□ -0.2
SOX3P41225 MIR4538-201ENST00000581377 78 ntBASIC13.81□□□□□ -0.2
SOX3P41225 EEF1DP1-201ENST00000585891 896 ntBASIC13.81□□□□□ -0.2
SOX3P41225 CYGB-203ENST00000589145 788 ntTSL 3 BASIC13.81□□□□□ -0.2
SOX3P41225 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC13.81□□□□□ -0.2
SOX3P41225 ZACNP1-201ENST00000612259 710 ntBASIC13.81□□□□□ -0.2
SOX3P41225 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC13.81□□□□□ -0.2
SOX3P41225 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC13.81□□□□□ -0.2
SOX3P41225 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
SOX3P41225 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC13.81□□□□□ -0.2
SOX3P41225 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SOX3P41225 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC13.81□□□□□ -0.2
SOX3P41225 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SOX3P41225 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
SOX3P41225 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SOX3P41225 AL023775.1-201ENST00000454907 1746 ntBASIC13.81□□□□□ -0.2
SOX3P41225 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC13.81□□□□□ -0.2
SOX3P41225 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SOX3P41225 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
SOX3P41225 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC13.81□□□□□ -0.2
SOX3P41225 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SOX3P41225 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC13.81□□□□□ -0.2
SOX3P41225 AC126335.2-201ENST00000623362 4637 ntBASIC13.81□□□□□ -0.2
SOX3P41225 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SOX3P41225 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
SOX3P41225 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC13.81□□□□□ -0.2
SOX3P41225 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC13.8□□□□□ -0.2
SOX3P41225 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX3P41225 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
SOX3P41225 INE2-201ENST00000630399 1874 ntBASIC13.8□□□□□ -0.2
SOX3P41225 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
SOX3P41225 MST1P2-201ENST00000457982 2291 ntBASIC13.8□□□□□ -0.2
SOX3P41225 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX3P41225 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX3P41225 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX3P41225 AC011840.2-201ENST00000563063 1520 ntBASIC13.8□□□□□ -0.2
SOX3P41225 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
SOX3P41225 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SOX3P41225 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC13.8□□□□□ -0.2
SOX3P41225 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SOX3P41225 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
SOX3P41225 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX3P41225 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX3P41225 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC13.8□□□□□ -0.2
SOX3P41225 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX3P41225 RGS5-214ENST00000429865 754 ntTSL 3 BASIC13.8□□□□□ -0.2
SOX3P41225 MTX1P1-201ENST00000440904 838 ntBASIC13.8□□□□□ -0.2
SOX3P41225 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SOX3P41225 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC13.8□□□□□ -0.2
SOX3P41225 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
SOX3P41225 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
SOX3P41225 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC13.8□□□□□ -0.2
SOX3P41225 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC13.8□□□□□ -0.2
SOX3P41225 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.8□□□□□ -0.2
SOX3P41225 AC091271.1-201ENST00000611877 1162 ntBASIC13.8□□□□□ -0.2
SOX3P41225 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SOX3P41225 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SOX3P41225 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SOX3P41225 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms