Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC15.34■□□□□ 0.05
APOEP02649 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC15.34■□□□□ 0.05
APOEP02649 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC15.34■□□□□ 0.05
APOEP02649 AL591846.1-201ENST00000451736 433 ntBASIC15.34■□□□□ 0.05
APOEP02649 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
APOEP02649 AGER-214ENST00000538695 487 ntTSL 2 BASIC15.34■□□□□ 0.05
APOEP02649 USB1-203ENST00000539737 1212 ntTSL 2 BASIC15.34■□□□□ 0.05
APOEP02649 AC100827.2-201ENST00000563214 1194 ntBASIC15.34■□□□□ 0.05
APOEP02649 DUX4L46-201ENST00000566845 751 ntBASIC15.34■□□□□ 0.05
APOEP02649 AC104982.3-201ENST00000581995 514 ntBASIC15.34■□□□□ 0.05
APOEP02649 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC15.34■□□□□ 0.05
APOEP02649 DIO1-215ENST00000610607 796 ntTSL 5 BASIC15.34■□□□□ 0.05
APOEP02649 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC15.34■□□□□ 0.05
APOEP02649 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
APOEP02649 ABBA01031663.1-201ENST00000635630 790 ntBASIC15.34■□□□□ 0.05
APOEP02649 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
APOEP02649 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
APOEP02649 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
APOEP02649 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC15.34■□□□□ 0.05
APOEP02649 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
APOEP02649 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
APOEP02649 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC15.34■□□□□ 0.05
APOEP02649 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
APOEP02649 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
APOEP02649 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.05
APOEP02649 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
APOEP02649 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
APOEP02649 CNTNAP3P2-201ENST00000617175 3861 ntBASIC15.33■□□□□ 0.05
APOEP02649 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
APOEP02649 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC15.33■□□□□ 0.04
APOEP02649 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
APOEP02649 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.04
APOEP02649 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
APOEP02649 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
APOEP02649 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
APOEP02649 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
APOEP02649 MIR663B-201ENST00000408361 115 ntBASIC15.33■□□□□ 0.04
APOEP02649 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
APOEP02649 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC15.33■□□□□ 0.04
APOEP02649 SKA2-202ENST00000437036 625 ntTSL 2 BASIC15.33■□□□□ 0.04
APOEP02649 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
APOEP02649 APOA2-204ENST00000464492 530 ntTSL 3 BASIC15.33■□□□□ 0.04
APOEP02649 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
APOEP02649 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
APOEP02649 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC15.33■□□□□ 0.04
APOEP02649 FAM8A2P-201ENST00000528813 1142 ntBASIC15.33■□□□□ 0.04
APOEP02649 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC15.33■□□□□ 0.04
APOEP02649 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
APOEP02649 AC027601.3-201ENST00000622907 509 ntBASIC15.33■□□□□ 0.04
APOEP02649 MVK-217ENST00000639206 367 ntTSL 5 BASIC15.33■□□□□ 0.04
APOEP02649 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC15.33■□□□□ 0.04
APOEP02649 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
APOEP02649 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
APOEP02649 AC136759.1-202ENST00000530858 2194 ntBASIC15.33■□□□□ 0.04
APOEP02649 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC15.33■□□□□ 0.04
APOEP02649 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
APOEP02649 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
APOEP02649 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
APOEP02649 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
APOEP02649 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
APOEP02649 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
APOEP02649 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC15.33■□□□□ 0.04
APOEP02649 E2F3P2-201ENST00000447755 1422 ntBASIC15.33■□□□□ 0.04
APOEP02649 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
APOEP02649 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
APOEP02649 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
APOEP02649 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
APOEP02649 AC006504.5-208ENST00000588784 2401 ntBASIC15.33■□□□□ 0.04
APOEP02649 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
APOEP02649 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
APOEP02649 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
APOEP02649 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
APOEP02649 F10-203ENST00000409306 1450 ntTSL 3 BASIC15.33■□□□□ 0.04
APOEP02649 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
APOEP02649 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
APOEP02649 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
APOEP02649 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC15.33■□□□□ 0.04
APOEP02649 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
APOEP02649 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
APOEP02649 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC15.32■□□□□ 0.04
APOEP02649 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC15.32■□□□□ 0.04
APOEP02649 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
APOEP02649 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC15.32■□□□□ 0.04
APOEP02649 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
APOEP02649 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
APOEP02649 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC15.32■□□□□ 0.04
APOEP02649 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
APOEP02649 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
APOEP02649 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC15.32■□□□□ 0.04
APOEP02649 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC15.32■□□□□ 0.04
APOEP02649 POM121L10P-201ENST00000436994 1285 ntBASIC15.32■□□□□ 0.04
APOEP02649 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
APOEP02649 CICP12-201ENST00000455801 843 ntBASIC15.32■□□□□ 0.04
APOEP02649 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
APOEP02649 AC021723.1-201ENST00000486306 515 ntBASIC15.32■□□□□ 0.04
APOEP02649 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC15.32■□□□□ 0.04
APOEP02649 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC15.32■□□□□ 0.04
APOEP02649 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC15.32■□□□□ 0.04
APOEP02649 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC15.32■□□□□ 0.04
APOEP02649 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms