Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC17.32■□□□□ 0.36
MBD4O95243 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
MBD4O95243 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MBD4O95243 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC17.32■□□□□ 0.36
MBD4O95243 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MBD4O95243 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC17.32■□□□□ 0.36
MBD4O95243 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
MBD4O95243 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MBD4O95243 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MBD4O95243 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
MBD4O95243 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC17.32■□□□□ 0.36
MBD4O95243 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MBD4O95243 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MBD4O95243 LAP3P2-201ENST00000454686 1454 ntBASIC17.31■□□□□ 0.36
MBD4O95243 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC17.31■□□□□ 0.36
MBD4O95243 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
MBD4O95243 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MBD4O95243 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MBD4O95243 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
MBD4O95243 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MBD4O95243 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MBD4O95243 AC015909.3-201ENST00000572855 1794 ntBASIC17.31■□□□□ 0.36
MBD4O95243 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC17.31■□□□□ 0.36
MBD4O95243 JTB-202ENST00000356648 1040 ntTSL 2 BASIC17.31■□□□□ 0.36
MBD4O95243 RNA5SP359-201ENST00000364838 113 ntBASIC17.31■□□□□ 0.36
MBD4O95243 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MBD4O95243 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MBD4O95243 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC17.31■□□□□ 0.36
MBD4O95243 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MBD4O95243 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MBD4O95243 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC17.31■□□□□ 0.36
MBD4O95243 AL133466.1-201ENST00000447582 150 ntBASIC17.31■□□□□ 0.36
MBD4O95243 IMP3P2-201ENST00000489760 475 ntBASIC17.31■□□□□ 0.36
MBD4O95243 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC17.31■□□□□ 0.36
MBD4O95243 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC17.31■□□□□ 0.36
MBD4O95243 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC17.31■□□□□ 0.36
MBD4O95243 FGFR3P5-201ENST00000564496 886 ntBASIC17.31■□□□□ 0.36
MBD4O95243 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC17.31■□□□□ 0.36
MBD4O95243 AC020922.3-201ENST00000595064 547 ntBASIC17.31■□□□□ 0.36
MBD4O95243 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MBD4O95243 AL606495.2-201ENST00000605867 535 ntBASIC17.31■□□□□ 0.36
MBD4O95243 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC17.31■□□□□ 0.36
MBD4O95243 AC090386.2-201ENST00000623010 1039 ntBASIC17.31■□□□□ 0.36
MBD4O95243 CDK7-214ENST00000626796 358 ntTSL 5 BASIC17.31■□□□□ 0.36
MBD4O95243 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC17.31■□□□□ 0.36
MBD4O95243 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MBD4O95243 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
MBD4O95243 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
MBD4O95243 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC17.31■□□□□ 0.36
MBD4O95243 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MBD4O95243 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
MBD4O95243 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC17.31■□□□□ 0.36
MBD4O95243 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MBD4O95243 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MBD4O95243 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
MBD4O95243 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MBD4O95243 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MBD4O95243 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC17.31■□□□□ 0.36
MBD4O95243 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC17.3■□□□□ 0.36
MBD4O95243 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
MBD4O95243 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MBD4O95243 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC17.3■□□□□ 0.36
MBD4O95243 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
MBD4O95243 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MBD4O95243 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC17.3■□□□□ 0.36
MBD4O95243 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
MBD4O95243 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MBD4O95243 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MBD4O95243 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
MBD4O95243 FRMPD2B-201ENST00000431305 1347 ntBASIC17.3■□□□□ 0.36
MBD4O95243 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
MBD4O95243 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
MBD4O95243 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MBD4O95243 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
MBD4O95243 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC17.3■□□□□ 0.36
MBD4O95243 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
MBD4O95243 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC17.3■□□□□ 0.36
MBD4O95243 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC17.3■□□□□ 0.36
MBD4O95243 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC17.3■□□□□ 0.36
MBD4O95243 AC116345.2-201ENST00000512837 523 ntBASIC17.3■□□□□ 0.36
MBD4O95243 AC105129.2-201ENST00000559536 390 ntBASIC17.3■□□□□ 0.36
MBD4O95243 NAT9-211ENST00000580632 799 ntTSL 3 BASIC17.3■□□□□ 0.36
MBD4O95243 MIR3188-201ENST00000583494 85 ntBASIC17.3■□□□□ 0.36
MBD4O95243 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC17.3■□□□□ 0.36
MBD4O95243 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC17.3■□□□□ 0.36
MBD4O95243 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC17.3■□□□□ 0.36
MBD4O95243 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MBD4O95243 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC17.3■□□□□ 0.36
MBD4O95243 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MBD4O95243 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
MBD4O95243 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MBD4O95243 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC17.3■□□□□ 0.36
MBD4O95243 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
MBD4O95243 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MBD4O95243 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC17.3■□□□□ 0.36
MBD4O95243 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC17.3■□□□□ 0.36
MBD4O95243 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MBD4O95243 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
MBD4O95243 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
MBD4O95243 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms