Protein–RNA interactions for Protein: O75841

UPK1B, Uroplakin-1b, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1BO75841 SYBU-217ENST00000528331 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
UPK1BO75841 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
UPK1BO75841 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC12.7□□□□□ -0.38
UPK1BO75841 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
UPK1BO75841 TMEM26-202ENST00000399298 5151 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
UPK1BO75841 AC092028.1-202ENST00000641483 3547 ntBASIC12.7□□□□□ -0.38
UPK1BO75841 AC092028.1-201ENST00000641781 3540 ntBASIC12.7□□□□□ -0.38
UPK1BO75841 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
UPK1BO75841 SNED1-201ENST00000310397 8174 ntAPPRIS P2 TSL 5 BASIC12.7□□□□□ -0.38
UPK1BO75841 UGT3A1-201ENST00000274278 5122 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
UPK1BO75841 CXCR5-201ENST00000292174 4431 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
UPK1BO75841 DTX2P1-UPK3BP1-PMS2P11-203ENST00000636308 4646 ntTSL 5 BASIC12.69□□□□□ -0.38
UPK1BO75841 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC12.69□□□□□ -0.38
UPK1BO75841 TBC1D14-208ENST00000451522 4149 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
UPK1BO75841 FAM214B-205ENST00000488109 2999 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
UPK1BO75841 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC12.69□□□□□ -0.38
UPK1BO75841 SELPLG-203ENST00000550948 2256 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC12.69□□□□□ -0.38
UPK1BO75841 KCNK10-202ENST00000319231 2725 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 KIF21B-204ENST00000461742 5428 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC12.69□□□□□ -0.38
UPK1BO75841 NR4A1-201ENST00000243050 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
UPK1BO75841 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 BRPF3-201ENST00000339717 4820 ntTSL 5 BASIC12.69□□□□□ -0.38
UPK1BO75841 REV3L-207ENST00000435970 10943 ntTSL 2 BASIC12.69□□□□□ -0.38
UPK1BO75841 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC12.69□□□□□ -0.38
UPK1BO75841 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 AC145098.2-201ENST00000623593 3026 ntBASIC12.69□□□□□ -0.38
UPK1BO75841 EEF2KMT-201ENST00000427587 2390 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 LSM14A-201ENST00000433627 3424 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 TLE3-220ENST00000559929 3408 ntTSL 5 BASIC12.69□□□□□ -0.38
UPK1BO75841 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
UPK1BO75841 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC12.69□□□□□ -0.38
UPK1BO75841 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
UPK1BO75841 HPSE2-202ENST00000370549 2121 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC12.69□□□□□ -0.38
UPK1BO75841 HIST2H3DP1-201ENST00000401004 416 ntBASIC12.69□□□□□ -0.38
UPK1BO75841 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
UPK1BO75841 KRT18P64-201ENST00000434946 1219 ntBASIC12.69□□□□□ -0.38
UPK1BO75841 KRT18P43-201ENST00000469825 1281 ntBASIC12.69□□□□□ -0.38
UPK1BO75841 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC12.69□□□□□ -0.38
UPK1BO75841 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
UPK1BO75841 SORD2P-201ENST00000558556 1069 ntBASIC12.69□□□□□ -0.38
UPK1BO75841 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC12.69□□□□□ -0.38
UPK1BO75841 AC096734.2-201ENST00000562054 433 ntBASIC12.69□□□□□ -0.38
UPK1BO75841 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC12.69□□□□□ -0.38
UPK1BO75841 AC090617.6-201ENST00000572790 443 ntTSL 3 BASIC12.69□□□□□ -0.38
UPK1BO75841 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC12.69□□□□□ -0.38
UPK1BO75841 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC12.69□□□□□ -0.38
UPK1BO75841 ELN-204ENST00000357036 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 ERAP1-201ENST00000296754 5495 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 MAGED1-201ENST00000326587 2747 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 XBP1-204ENST00000405219 1690 ntTSL 2 BASIC12.69□□□□□ -0.38
UPK1BO75841 CCNY-203ENST00000374704 3960 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 LMBR1L-201ENST00000267102 2934 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 POLG-202ENST00000442287 4487 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 BCL2L2-201ENST00000250405 3605 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 CUL4A-203ENST00000375441 4037 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 FAM102A-202ENST00000373084 3352 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 LLGL1-203ENST00000621229 3187 ntTSL 5 BASIC12.69□□□□□ -0.38
UPK1BO75841 SGSM3-201ENST00000248929 2969 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 TCAF2-205ENST00000444908 2976 ntTSL 5 BASIC12.69□□□□□ -0.38
UPK1BO75841 SLC44A4-202ENST00000229729 2589 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 SLC45A2-201ENST00000296589 1772 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
UPK1BO75841 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC12.69□□□□□ -0.38
UPK1BO75841 TMEM134-201ENST00000308022 3534 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
UPK1BO75841 PDZRN3-205ENST00000466780 2737 ntTSL 2 BASIC12.68□□□□□ -0.38
UPK1BO75841 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
UPK1BO75841 CACNG3-201ENST00000005284 3088 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
UPK1BO75841 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
UPK1BO75841 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC12.68□□□□□ -0.38
UPK1BO75841 WDR66-202ENST00000397454 3420 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
UPK1BO75841 DHX30-201ENST00000348968 3994 ntTSL 5 BASIC12.68□□□□□ -0.38
UPK1BO75841 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
UPK1BO75841 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
UPK1BO75841 EGFR-AS1-201ENST00000442411 2806 ntTSL 2 BASIC12.68□□□□□ -0.38
UPK1BO75841 ESRRB-204ENST00000509242 2849 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
UPK1BO75841 KIF17-202ENST00000375044 3572 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
UPK1BO75841 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
UPK1BO75841 PSME3-217ENST00000622892 3183 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
UPK1BO75841 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
UPK1BO75841 AP002414.3-201ENST00000589352 1468 ntBASIC12.68□□□□□ -0.38
UPK1BO75841 AC126564.1-201ENST00000623628 2013 ntBASIC12.68□□□□□ -0.38
UPK1BO75841 MZF1-AS1-202ENST00000600534 2567 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
UPK1BO75841 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
UPK1BO75841 PLOD3-201ENST00000223127 2920 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
UPK1BO75841 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC12.68□□□□□ -0.38
UPK1BO75841 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC12.68□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms