Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 AK6-201ENST00000380818 1183 ntTSL 2 BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 HIST1H2BPS3-201ENST00000419683 341 ntBASIC13.97□□□□□ -0.17
BRF2Q9HAW0 USB1-202ENST00000423271 1217 ntTSL 2 BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 AC023310.1-201ENST00000554836 735 ntBASIC13.97□□□□□ -0.17
BRF2Q9HAW0 AC005225.4-201ENST00000557330 545 ntBASIC13.97□□□□□ -0.17
BRF2Q9HAW0 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 KLK3-207ENST00000595952 969 ntTSL 3 BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 AC132192.2-201ENST00000596206 1147 ntBASIC13.97□□□□□ -0.17
BRF2Q9HAW0 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 AC105233.6-201ENST00000642093 218 ntBASIC13.97□□□□□ -0.17
BRF2Q9HAW0 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
BRF2Q9HAW0 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
BRF2Q9HAW0 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
BRF2Q9HAW0 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
BRF2Q9HAW0 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
BRF2Q9HAW0 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
BRF2Q9HAW0 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
BRF2Q9HAW0 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC13.96□□□□□ -0.17
BRF2Q9HAW0 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC13.96□□□□□ -0.17
BRF2Q9HAW0 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
BRF2Q9HAW0 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
BRF2Q9HAW0 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC13.96□□□□□ -0.17
BRF2Q9HAW0 PDIA3P1-201ENST00000471856 1510 ntBASIC13.96□□□□□ -0.17
BRF2Q9HAW0 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
BRF2Q9HAW0 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
BRF2Q9HAW0 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
BRF2Q9HAW0 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC13.96□□□□□ -0.17
BRF2Q9HAW0 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC13.96□□□□□ -0.17
BRF2Q9HAW0 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
BRF2Q9HAW0 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC13.96□□□□□ -0.17
BRF2Q9HAW0 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC13.96□□□□□ -0.17
BRF2Q9HAW0 DUX4L46-201ENST00000566845 751 ntBASIC13.96□□□□□ -0.17
BRF2Q9HAW0 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
BRF2Q9HAW0 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
BRF2Q9HAW0 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
BRF2Q9HAW0 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.17
BRF2Q9HAW0 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
BRF2Q9HAW0 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.18
BRF2Q9HAW0 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
BRF2Q9HAW0 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
BRF2Q9HAW0 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.18
BRF2Q9HAW0 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
BRF2Q9HAW0 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC13.96□□□□□ -0.18
BRF2Q9HAW0 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC13.96□□□□□ -0.18
BRF2Q9HAW0 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
BRF2Q9HAW0 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
BRF2Q9HAW0 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC13.96□□□□□ -0.18
BRF2Q9HAW0 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC13.96□□□□□ -0.18
BRF2Q9HAW0 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
BRF2Q9HAW0 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.18
BRF2Q9HAW0 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.18
BRF2Q9HAW0 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC13.95□□□□□ -0.18
BRF2Q9HAW0 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
BRF2Q9HAW0 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
BRF2Q9HAW0 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
BRF2Q9HAW0 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
BRF2Q9HAW0 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
BRF2Q9HAW0 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
BRF2Q9HAW0 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
BRF2Q9HAW0 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
BRF2Q9HAW0 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC13.95□□□□□ -0.18
BRF2Q9HAW0 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
BRF2Q9HAW0 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
BRF2Q9HAW0 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC13.95□□□□□ -0.18
BRF2Q9HAW0 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC13.95□□□□□ -0.18
BRF2Q9HAW0 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
BRF2Q9HAW0 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
BRF2Q9HAW0 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC13.95□□□□□ -0.18
BRF2Q9HAW0 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
BRF2Q9HAW0 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
BRF2Q9HAW0 RPF1-202ENST00000370656 724 ntTSL 2 BASIC13.95□□□□□ -0.18
BRF2Q9HAW0 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
BRF2Q9HAW0 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
BRF2Q9HAW0 USP17L6P-201ENST00000382470 1197 ntBASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms