Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 DIO3OS-211ENST00000557532 712 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LRCH3Q96II8 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC15.72■□□□□ 0.11
LRCH3Q96II8 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC15.72■□□□□ 0.11
LRCH3Q96II8 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC15.72■□□□□ 0.11
LRCH3Q96II8 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC15.72■□□□□ 0.11
LRCH3Q96II8 ST5-261ENST00000626808 1071 ntTSL 5 BASIC15.72■□□□□ 0.11
LRCH3Q96II8 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LRCH3Q96II8 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.72■□□□□ 0.11
LRCH3Q96II8 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC15.72■□□□□ 0.11
LRCH3Q96II8 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC15.72■□□□□ 0.11
LRCH3Q96II8 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
LRCH3Q96II8 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LRCH3Q96II8 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LRCH3Q96II8 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC15.72■□□□□ 0.11
LRCH3Q96II8 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LRCH3Q96II8 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LRCH3Q96II8 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LRCH3Q96II8 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
LRCH3Q96II8 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LRCH3Q96II8 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
LRCH3Q96II8 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
LRCH3Q96II8 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LRCH3Q96II8 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
LRCH3Q96II8 AC084364.1-201ENST00000551967 1556 ntBASIC15.71■□□□□ 0.11
LRCH3Q96II8 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LRCH3Q96II8 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LRCH3Q96II8 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC15.71■□□□□ 0.11
LRCH3Q96II8 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
LRCH3Q96II8 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LRCH3Q96II8 MYL10-201ENST00000223167 1009 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LRCH3Q96II8 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
LRCH3Q96II8 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
LRCH3Q96II8 MIR648-201ENST00000385046 94 ntBASIC15.71■□□□□ 0.11
LRCH3Q96II8 CELP-201ENST00000411440 1249 ntTSL 5 BASIC15.71■□□□□ 0.11
LRCH3Q96II8 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC15.71■□□□□ 0.11
LRCH3Q96II8 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC15.71■□□□□ 0.11
LRCH3Q96II8 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC15.71■□□□□ 0.11
LRCH3Q96II8 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC15.71■□□□□ 0.11
LRCH3Q96II8 RPL18AP8-201ENST00000486071 528 ntBASIC15.71■□□□□ 0.11
LRCH3Q96II8 BCRP4-201ENST00000506079 804 ntBASIC15.71■□□□□ 0.11
LRCH3Q96II8 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC15.71■□□□□ 0.11
LRCH3Q96II8 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC15.71■□□□□ 0.11
LRCH3Q96II8 PRR13-209ENST00000549924 625 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
LRCH3Q96II8 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC15.71■□□□□ 0.11
LRCH3Q96II8 AC124068.2-201ENST00000569473 1109 ntBASIC15.71■□□□□ 0.11
LRCH3Q96II8 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LRCH3Q96II8 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC15.71■□□□□ 0.11
LRCH3Q96II8 AL022334.2-201ENST00000610000 484 ntBASIC15.71■□□□□ 0.11
LRCH3Q96II8 SRP19-208ENST00000621420 1270 ntTSL 3 BASIC15.71■□□□□ 0.11
LRCH3Q96II8 AP000769.1-203ENST00000637245 208 ntBASIC15.71■□□□□ 0.11
LRCH3Q96II8 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LRCH3Q96II8 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
LRCH3Q96II8 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
LRCH3Q96II8 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.71■□□□□ 0.11
LRCH3Q96II8 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
LRCH3Q96II8 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LRCH3Q96II8 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
LRCH3Q96II8 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
LRCH3Q96II8 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.71■□□□□ 0.11
LRCH3Q96II8 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LRCH3Q96II8 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.71■□□□□ 0.11
LRCH3Q96II8 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LRCH3Q96II8 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.71■□□□□ 0.11
LRCH3Q96II8 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC15.71■□□□□ 0.1
LRCH3Q96II8 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC15.71■□□□□ 0.1
LRCH3Q96II8 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
LRCH3Q96II8 CHRNA1-205ENST00000409542 1460 ntTSL 3 BASIC15.71■□□□□ 0.1
LRCH3Q96II8 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.1
LRCH3Q96II8 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
LRCH3Q96II8 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
LRCH3Q96II8 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LRCH3Q96II8 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
LRCH3Q96II8 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LRCH3Q96II8 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.7■□□□□ 0.1
LRCH3Q96II8 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
LRCH3Q96II8 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LRCH3Q96II8 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LRCH3Q96II8 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LRCH3Q96II8 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
LRCH3Q96II8 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LRCH3Q96II8 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.7■□□□□ 0.1
LRCH3Q96II8 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
LRCH3Q96II8 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LRCH3Q96II8 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LRCH3Q96II8 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC15.7■□□□□ 0.1
LRCH3Q96II8 CSHL1-201ENST00000259003 739 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LRCH3Q96II8 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LRCH3Q96II8 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
LRCH3Q96II8 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
LRCH3Q96II8 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC15.7■□□□□ 0.1
LRCH3Q96II8 SOD2-205ENST00000444946 917 ntTSL 2 BASIC15.7■□□□□ 0.1
LRCH3Q96II8 CSHL1-206ENST00000450719 973 ntTSL 2 BASIC15.7■□□□□ 0.1
LRCH3Q96II8 AC103923.1-201ENST00000453229 1228 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LRCH3Q96II8 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC15.7■□□□□ 0.1
LRCH3Q96II8 KNOP1P1-201ENST00000542108 989 ntBASIC15.7■□□□□ 0.1
LRCH3Q96II8 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC15.7■□□□□ 0.1
LRCH3Q96II8 AC023968.2-201ENST00000560593 1049 ntBASIC15.7■□□□□ 0.1
LRCH3Q96II8 AC120498.5-201ENST00000561757 299 ntBASIC15.7■□□□□ 0.1
LRCH3Q96II8 MIR4254-201ENST00000581063 76 ntBASIC15.7■□□□□ 0.1
LRCH3Q96II8 AC009145.4-201ENST00000625119 1294 ntBASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms