Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 AC023024.2-201ENST00000623561 1993 ntBASIC14.11□□□□□ -0.15
COL28A1Q2UY09 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 HCG27-204ENST00000424675 895 ntTSL 3 BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 STUB1-204ENST00000564370 875 ntTSL 2 BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 LINC00431-202ENST00000636375 159 ntBASIC14.1□□□□□ -0.15
COL28A1Q2UY09 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 PPP1R26P4-201ENST00000619065 3527 ntBASIC14.1□□□□□ -0.15
COL28A1Q2UY09 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL28A1Q2UY09 AC005252.3-201ENST00000623855 2258 ntBASIC14.1□□□□□ -0.15
COL28A1Q2UY09 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 AL359183.1-201ENST00000623796 2132 ntBASIC14.09□□□□□ -0.15
COL28A1Q2UY09 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 CELP-203ENST00000624767 2414 ntTSL 5 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 AL592076.1-201ENST00000424448 303 ntBASIC14.09□□□□□ -0.15
COL28A1Q2UY09 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms