Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC15.29■□□□□ 0.04
HDAC4P56524 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 RBM38-204ENST00000371219 760 ntTSL 2 BASIC15.29■□□□□ 0.04
HDAC4P56524 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
HDAC4P56524 AK6-201ENST00000380818 1183 ntTSL 2 BASIC15.29■□□□□ 0.04
HDAC4P56524 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 ATP5G2P4-201ENST00000442175 420 ntBASIC15.29■□□□□ 0.04
HDAC4P56524 AL035414.1-201ENST00000451327 857 ntBASIC15.29■□□□□ 0.04
HDAC4P56524 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC15.29■□□□□ 0.04
HDAC4P56524 BNIP3P42-201ENST00000454982 569 ntBASIC15.29■□□□□ 0.04
HDAC4P56524 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC15.29■□□□□ 0.04
HDAC4P56524 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC15.29■□□□□ 0.04
HDAC4P56524 ACR-203ENST00000529621 708 ntTSL 5 BASIC15.29■□□□□ 0.04
HDAC4P56524 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
HDAC4P56524 NOP2-220ENST00000545915 630 ntTSL 2 BASIC15.29■□□□□ 0.04
HDAC4P56524 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC15.29■□□□□ 0.04
HDAC4P56524 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 CYGB-203ENST00000589145 788 ntTSL 3 BASIC15.29■□□□□ 0.04
HDAC4P56524 AC132192.2-201ENST00000596206 1147 ntBASIC15.29■□□□□ 0.04
HDAC4P56524 AC009955.4-201ENST00000597192 544 ntBASIC15.29■□□□□ 0.04
HDAC4P56524 BNIP3P29-201ENST00000598302 571 ntBASIC15.29■□□□□ 0.04
HDAC4P56524 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC15.29■□□□□ 0.04
HDAC4P56524 AC011447.5-201ENST00000616168 564 ntBASIC15.29■□□□□ 0.04
HDAC4P56524 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
HDAC4P56524 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 AL359183.1-201ENST00000623796 2132 ntBASIC15.29■□□□□ 0.04
HDAC4P56524 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC15.29■□□□□ 0.04
HDAC4P56524 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC15.29■□□□□ 0.04
HDAC4P56524 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
HDAC4P56524 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.29■□□□□ 0.04
HDAC4P56524 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC15.29■□□□□ 0.04
HDAC4P56524 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC15.29■□□□□ 0.04
HDAC4P56524 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC4P56524 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
HDAC4P56524 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC4P56524 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC15.28■□□□□ 0.04
HDAC4P56524 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
HDAC4P56524 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC15.28■□□□□ 0.04
HDAC4P56524 USP4-203ENST00000415188 1454 ntTSL 3 BASIC15.28■□□□□ 0.04
HDAC4P56524 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC4P56524 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC4P56524 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC4P56524 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
HDAC4P56524 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC4P56524 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC4P56524 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC4P56524 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
HDAC4P56524 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC15.28■□□□□ 0.04
HDAC4P56524 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC4P56524 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC15.28■□□□□ 0.04
HDAC4P56524 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC4P56524 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC15.28■□□□□ 0.04
HDAC4P56524 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC15.28■□□□□ 0.04
HDAC4P56524 AC079178.1-201ENST00000420915 656 ntBASIC15.28■□□□□ 0.04
HDAC4P56524 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
HDAC4P56524 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC15.28■□□□□ 0.04
HDAC4P56524 DUX4L46-201ENST00000566845 751 ntBASIC15.28■□□□□ 0.04
HDAC4P56524 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
HDAC4P56524 EEF1DP1-201ENST00000585891 896 ntBASIC15.28■□□□□ 0.04
HDAC4P56524 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC15.28■□□□□ 0.04
HDAC4P56524 AC009542.2-202ENST00000619004 1067 ntBASIC15.28■□□□□ 0.04
HDAC4P56524 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC4P56524 ABR-228ENST00000574437 3196 ntTSL 5 BASIC15.28■□□□□ 0.04
HDAC4P56524 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC15.28■□□□□ 0.04
HDAC4P56524 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC15.28■□□□□ 0.04
HDAC4P56524 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC4P56524 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC4P56524 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC4P56524 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC4P56524 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC4P56524 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC4P56524 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC15.27■□□□□ 0.04
HDAC4P56524 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HDAC4P56524 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC15.27■□□□□ 0.04
HDAC4P56524 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HDAC4P56524 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC15.27■□□□□ 0.04
HDAC4P56524 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.04
HDAC4P56524 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HDAC4P56524 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
HDAC4P56524 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HDAC4P56524 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC15.27■□□□□ 0.04
HDAC4P56524 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC15.27■□□□□ 0.04
HDAC4P56524 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms