Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSH6P52701 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSH6P52701 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
MSH6P52701 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
MSH6P52701 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC19.78■□□□□ 0.76
MSH6P52701 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSH6P52701 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
MSH6P52701 SIRPB3P-201ENST00000340424 1216 ntBASIC19.78■□□□□ 0.76
MSH6P52701 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSH6P52701 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
MSH6P52701 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSH6P52701 AHCYP3-201ENST00000420053 1279 ntBASIC19.78■□□□□ 0.76
MSH6P52701 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
MSH6P52701 HFE-209ENST00000461397 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSH6P52701 SPAG5-AS1-204ENST00000556050 871 ntTSL 2 BASIC19.78■□□□□ 0.76
MSH6P52701 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC19.78■□□□□ 0.76
MSH6P52701 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSH6P52701 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSH6P52701 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC19.78■□□□□ 0.76
MSH6P52701 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
MSH6P52701 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC19.78■□□□□ 0.76
MSH6P52701 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC19.78■□□□□ 0.76
MSH6P52701 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC19.78■□□□□ 0.76
MSH6P52701 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSH6P52701 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC19.77■□□□□ 0.76
MSH6P52701 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
MSH6P52701 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MSH6P52701 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
MSH6P52701 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC19.77■□□□□ 0.76
MSH6P52701 PDXDC2P-206ENST00000534700 1315 ntBASIC19.77■□□□□ 0.76
MSH6P52701 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MSH6P52701 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MSH6P52701 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MSH6P52701 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
MSH6P52701 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC19.77■□□□□ 0.76
MSH6P52701 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
MSH6P52701 NCR1-204ENST00000357397 594 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
MSH6P52701 AL121949.3-201ENST00000406684 385 ntBASIC19.77■□□□□ 0.76
MSH6P52701 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC19.77■□□□□ 0.76
MSH6P52701 AL137244.1-201ENST00000422931 865 ntBASIC19.77■□□□□ 0.76
MSH6P52701 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC19.77■□□□□ 0.76
MSH6P52701 AC025594.1-201ENST00000469533 543 ntBASIC19.77■□□□□ 0.76
MSH6P52701 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC19.77■□□□□ 0.76
MSH6P52701 AC142086.5-202ENST00000562500 217 ntBASIC19.77■□□□□ 0.76
MSH6P52701 AC091304.3-201ENST00000566500 716 ntBASIC19.77■□□□□ 0.76
MSH6P52701 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC19.77■□□□□ 0.76
MSH6P52701 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC19.77■□□□□ 0.76
MSH6P52701 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC19.77■□□□□ 0.76
MSH6P52701 ESR1-214ENST00000638569 132 ntTSL 5 BASIC19.77■□□□□ 0.76
MSH6P52701 AL357143.1-203ENST00000639750 881 ntBASIC19.77■□□□□ 0.76
MSH6P52701 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC19.77■□□□□ 0.76
MSH6P52701 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
MSH6P52701 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC19.77■□□□□ 0.76
MSH6P52701 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
MSH6P52701 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MSH6P52701 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
MSH6P52701 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MSH6P52701 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
MSH6P52701 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
MSH6P52701 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
MSH6P52701 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
MSH6P52701 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSH6P52701 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
MSH6P52701 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSH6P52701 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
MSH6P52701 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSH6P52701 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
MSH6P52701 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSH6P52701 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC19.76■□□□□ 0.75
MSH6P52701 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSH6P52701 GSN-206ENST00000394353 2311 ntTSL 2 BASIC19.76■□□□□ 0.75
MSH6P52701 NQO2-204ENST00000380454 851 ntTSL 2 BASIC19.76■□□□□ 0.75
MSH6P52701 TXNL4B-203ENST00000426362 965 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
MSH6P52701 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
MSH6P52701 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC19.76■□□□□ 0.75
MSH6P52701 C10orf91-203ENST00000490765 462 ntTSL 3 BASIC19.76■□□□□ 0.75
MSH6P52701 AC100858.1-201ENST00000514059 1228 ntBASIC19.76■□□□□ 0.75
MSH6P52701 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC19.76■□□□□ 0.75
MSH6P52701 AC078814.4-201ENST00000546650 327 ntBASIC19.76■□□□□ 0.75
MSH6P52701 AC079414.2-201ENST00000567157 1104 ntBASIC19.76■□□□□ 0.75
MSH6P52701 PRMT1P1-201ENST00000604252 1009 ntBASIC19.76■□□□□ 0.75
MSH6P52701 MIR6125-201ENST00000618986 96 ntBASIC19.76■□□□□ 0.75
MSH6P52701 AP003900.1-201ENST00000622592 859 ntTSL 3 BASIC19.76■□□□□ 0.75
MSH6P52701 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC19.76■□□□□ 0.75
MSH6P52701 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
MSH6P52701 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
MSH6P52701 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSH6P52701 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
MSH6P52701 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
MSH6P52701 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
MSH6P52701 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSH6P52701 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSH6P52701 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC19.76■□□□□ 0.75
MSH6P52701 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSH6P52701 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
MSH6P52701 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH6P52701 AC023024.2-201ENST00000623561 1993 ntBASIC19.75■□□□□ 0.75
MSH6P52701 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH6P52701 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
MSH6P52701 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms