Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC14.44□□□□□ -0.1
CDH3P22223 AJ011931.1-201ENST00000618749 2492 ntBASIC14.44□□□□□ -0.1
CDH3P22223 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC14.44□□□□□ -0.1
CDH3P22223 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CDH3P22223 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC14.44□□□□□ -0.1
CDH3P22223 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDH3P22223 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDH3P22223 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CDH3P22223 AC015818.8-201ENST00000587907 1519 ntBASIC14.44□□□□□ -0.1
CDH3P22223 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC14.44□□□□□ -0.1
CDH3P22223 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDH3P22223 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDH3P22223 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDH3P22223 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC14.44□□□□□ -0.1
CDH3P22223 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDH3P22223 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDH3P22223 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDH3P22223 ZEB1-AS1-208ENST00000607166 2503 ntBASIC14.44□□□□□ -0.1
CDH3P22223 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
CDH3P22223 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDH3P22223 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDH3P22223 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDH3P22223 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC14.44□□□□□ -0.1
CDH3P22223 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC14.43□□□□□ -0.1
CDH3P22223 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC14.43□□□□□ -0.1
CDH3P22223 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
CDH3P22223 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
CDH3P22223 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CDH3P22223 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
CDH3P22223 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
CDH3P22223 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
CDH3P22223 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CDH3P22223 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 AC079178.1-201ENST00000420915 656 ntBASIC14.43□□□□□ -0.1
CDH3P22223 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC14.43□□□□□ -0.1
CDH3P22223 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 AC108725.1-201ENST00000495472 409 ntBASIC14.43□□□□□ -0.1
CDH3P22223 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CDH3P22223 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
CDH3P22223 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC14.43□□□□□ -0.1
CDH3P22223 PACS1-203ENST00000524815 628 ntTSL 4 BASIC14.43□□□□□ -0.1
CDH3P22223 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC14.43□□□□□ -0.1
CDH3P22223 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC14.43□□□□□ -0.1
CDH3P22223 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC14.43□□□□□ -0.1
CDH3P22223 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC14.43□□□□□ -0.1
CDH3P22223 ABBA01031663.1-201ENST00000635630 790 ntBASIC14.43□□□□□ -0.1
CDH3P22223 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CDH3P22223 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.43□□□□□ -0.1
CDH3P22223 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 AL928921.2-201ENST00000641325 2442 ntBASIC14.43□□□□□ -0.1
CDH3P22223 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH3P22223 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC14.43□□□□□ -0.1
CDH3P22223 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
CDH3P22223 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
CDH3P22223 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDH3P22223 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDH3P22223 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CDH3P22223 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC14.42□□□□□ -0.1
CDH3P22223 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDH3P22223 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDH3P22223 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDH3P22223 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
CDH3P22223 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CDH3P22223 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
CDH3P22223 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDH3P22223 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDH3P22223 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC14.42□□□□□ -0.1
CDH3P22223 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC14.42□□□□□ -0.1
CDH3P22223 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CDH3P22223 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
CDH3P22223 AGAP7P-201ENST00000582299 2062 ntBASIC14.42□□□□□ -0.1
CDH3P22223 AGAP14-201ENST00000624701 2060 ntBASIC14.42□□□□□ -0.1
CDH3P22223 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
CDH3P22223 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CDH3P22223 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDH3P22223 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms