Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HMGA1P17096 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGA1P17096 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC14.97□□□□□ -0.01
HMGA1P17096 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
HMGA1P17096 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
HMGA1P17096 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HMGA1P17096 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HMGA1P17096 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
HMGA1P17096 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC14.96□□□□□ -0.01
HMGA1P17096 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
HMGA1P17096 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC14.96□□□□□ -0.01
HMGA1P17096 AC232323.1-201ENST00000540724 2099 ntBASIC14.96□□□□□ -0.01
HMGA1P17096 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC14.96□□□□□ -0.01
HMGA1P17096 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HMGA1P17096 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HMGA1P17096 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC14.96□□□□□ -0.01
HMGA1P17096 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
HMGA1P17096 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HMGA1P17096 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC14.96□□□□□ -0.01
HMGA1P17096 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC14.96□□□□□ -0.01
HMGA1P17096 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
HMGA1P17096 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC14.96□□□□□ -0.01
HMGA1P17096 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC14.96□□□□□ -0.01
HMGA1P17096 RPL7P35-201ENST00000446943 740 ntBASIC14.96□□□□□ -0.01
HMGA1P17096 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.96□□□□□ -0.01
HMGA1P17096 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC14.96□□□□□ -0.01
HMGA1P17096 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC14.96□□□□□ -0.01
HMGA1P17096 MT3-203ENST00000565838 421 ntTSL 3 BASIC14.96□□□□□ -0.01
HMGA1P17096 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC14.96□□□□□ -0.01
HMGA1P17096 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.96□□□□□ -0.02
HMGA1P17096 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
HMGA1P17096 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC14.96□□□□□ -0.02
HMGA1P17096 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGA1P17096 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
HMGA1P17096 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGA1P17096 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGA1P17096 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGA1P17096 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HMGA1P17096 LINC00115-201ENST00000473798 1317 ntBASIC14.95□□□□□ -0.02
HMGA1P17096 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC14.95□□□□□ -0.02
HMGA1P17096 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGA1P17096 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGA1P17096 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC14.95□□□□□ -0.02
HMGA1P17096 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGA1P17096 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HMGA1P17096 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGA1P17096 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
HMGA1P17096 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGA1P17096 HLA-DMA-203ENST00000395305 777 ntBASIC14.95□□□□□ -0.02
HMGA1P17096 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC14.95□□□□□ -0.02
HMGA1P17096 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC14.95□□□□□ -0.02
HMGA1P17096 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC14.95□□□□□ -0.02
HMGA1P17096 CFL1-206ENST00000527344 962 ntTSL 2 BASIC14.95□□□□□ -0.02
HMGA1P17096 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC14.95□□□□□ -0.02
HMGA1P17096 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGA1P17096 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HMGA1P17096 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC14.95□□□□□ -0.02
HMGA1P17096 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC14.95□□□□□ -0.02
HMGA1P17096 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGA1P17096 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
HMGA1P17096 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.95□□□□□ -0.02
HMGA1P17096 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
HMGA1P17096 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC14.95□□□□□ -0.02
HMGA1P17096 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
HMGA1P17096 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC14.95□□□□□ -0.02
HMGA1P17096 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
HMGA1P17096 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGA1P17096 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC14.95□□□□□ -0.02
HMGA1P17096 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.95□□□□□ -0.02
HMGA1P17096 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.95□□□□□ -0.02
HMGA1P17096 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGA1P17096 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC14.95□□□□□ -0.02
HMGA1P17096 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
HMGA1P17096 API5-208ENST00000531273 1868 ntTSL 2 BASIC14.95□□□□□ -0.02
HMGA1P17096 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HMGA1P17096 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGA1P17096 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
HMGA1P17096 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
HMGA1P17096 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC14.95□□□□□ -0.02
HMGA1P17096 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
HMGA1P17096 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGA1P17096 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGA1P17096 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGA1P17096 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGA1P17096 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HMGA1P17096 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGA1P17096 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC14.94□□□□□ -0.02
HMGA1P17096 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC14.94□□□□□ -0.02
HMGA1P17096 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC14.94□□□□□ -0.02
HMGA1P17096 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGA1P17096 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.94□□□□□ -0.02
HMGA1P17096 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGA1P17096 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC14.94□□□□□ -0.02
HMGA1P17096 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGA1P17096 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGA1P17096 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HMGA1P17096 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
HMGA1P17096 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HMGA1P17096 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC14.94□□□□□ -0.02
HMGA1P17096 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms