Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.21□□□□□ -0.13
TNFP01375 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC14.21□□□□□ -0.13
TNFP01375 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
TNFP01375 FGD5P1-202ENST00000614866 2498 ntBASIC14.21□□□□□ -0.13
TNFP01375 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
TNFP01375 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
TNFP01375 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
TNFP01375 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
TNFP01375 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
TNFP01375 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
TNFP01375 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
TNFP01375 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
TNFP01375 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.21□□□□□ -0.14
TNFP01375 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC14.21□□□□□ -0.14
TNFP01375 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
TNFP01375 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
TNFP01375 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
TNFP01375 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TNFP01375 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
TNFP01375 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC14.2□□□□□ -0.14
TNFP01375 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
TNFP01375 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC14.2□□□□□ -0.14
TNFP01375 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TNFP01375 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TNFP01375 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TNFP01375 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC14.2□□□□□ -0.14
TNFP01375 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
TNFP01375 AGGF1P1-201ENST00000509500 2073 ntBASIC14.2□□□□□ -0.14
TNFP01375 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
TNFP01375 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TNFP01375 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TNFP01375 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TNFP01375 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
TNFP01375 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC14.2□□□□□ -0.14
TNFP01375 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC14.2□□□□□ -0.14
TNFP01375 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC14.2□□□□□ -0.14
TNFP01375 RPL8P2-201ENST00000430538 502 ntBASIC14.2□□□□□ -0.14
TNFP01375 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC14.2□□□□□ -0.14
TNFP01375 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC14.2□□□□□ -0.14
TNFP01375 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC14.2□□□□□ -0.14
TNFP01375 PARP8-218ENST00000513738 596 ntTSL 4 BASIC14.2□□□□□ -0.14
TNFP01375 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC14.2□□□□□ -0.14
TNFP01375 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TNFP01375 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC14.2□□□□□ -0.14
TNFP01375 PHBP15-201ENST00000574228 665 ntBASIC14.2□□□□□ -0.14
TNFP01375 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC14.2□□□□□ -0.14
TNFP01375 MEG3_2.1-201ENST00000611456 105 ntBASIC14.2□□□□□ -0.14
TNFP01375 RETN-203ENST00000629642 400 ntTSL 5 BASIC14.2□□□□□ -0.14
TNFP01375 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC14.2□□□□□ -0.14
TNFP01375 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
TNFP01375 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
TNFP01375 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
TNFP01375 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TNFP01375 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
TNFP01375 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
TNFP01375 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TNFP01375 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC14.2□□□□□ -0.14
TNFP01375 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
TNFP01375 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
TNFP01375 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC14.2□□□□□ -0.14
TNFP01375 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
TNFP01375 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TNFP01375 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TNFP01375 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TNFP01375 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
TNFP01375 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TNFP01375 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TNFP01375 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
TNFP01375 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC14.19□□□□□ -0.14
TNFP01375 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TNFP01375 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
TNFP01375 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TNFP01375 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC14.19□□□□□ -0.14
TNFP01375 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TNFP01375 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TNFP01375 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TNFP01375 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC14.19□□□□□ -0.14
TNFP01375 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
TNFP01375 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
TNFP01375 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
TNFP01375 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TNFP01375 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
TNFP01375 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
TNFP01375 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
TNFP01375 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC14.19□□□□□ -0.14
TNFP01375 AC026316.1-201ENST00000398900 414 ntBASIC14.19□□□□□ -0.14
TNFP01375 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
TNFP01375 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
TNFP01375 RPSAP15-201ENST00000448168 861 ntBASIC14.19□□□□□ -0.14
TNFP01375 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC14.19□□□□□ -0.14
TNFP01375 AP000358.1-201ENST00000456260 156 ntBASIC14.19□□□□□ -0.14
TNFP01375 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC14.19□□□□□ -0.14
TNFP01375 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC14.19□□□□□ -0.14
TNFP01375 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
TNFP01375 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC14.19□□□□□ -0.14
TNFP01375 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC14.19□□□□□ -0.14
TNFP01375 AC103810.10-201ENST00000606504 343 ntBASIC14.19□□□□□ -0.14
TNFP01375 AL022334.2-201ENST00000610000 484 ntBASIC14.19□□□□□ -0.14
TNFP01375 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC14.19□□□□□ -0.14
TNFP01375 AC103691.2-201ENST00000618824 433 ntBASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms