Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
USH2AO75445 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC6.29□□□□□ -1.4
USH2AO75445 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC6.29□□□□□ -1.4
USH2AO75445 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
USH2AO75445 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
USH2AO75445 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC6.29□□□□□ -1.4
USH2AO75445 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC6.29□□□□□ -1.4
USH2AO75445 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
USH2AO75445 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
USH2AO75445 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
USH2AO75445 SUMO1-206ENST00000409368 1187 ntTSL 4 BASIC6.29□□□□□ -1.4
USH2AO75445 AL161644.1-201ENST00000426901 1111 ntTSL 2 BASIC6.29□□□□□ -1.4
USH2AO75445 AL359915.1-201ENST00000457719 898 ntTSL 2 BASIC6.29□□□□□ -1.4
USH2AO75445 DLX6-203ENST00000555308 666 ntAPPRIS ALT2 TSL 2 BASIC6.29□□□□□ -1.4
USH2AO75445 SNRPN-208ENST00000577565 1298 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
USH2AO75445 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
USH2AO75445 AC245369.3-201ENST00000624687 411 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
USH2AO75445 RBMS3-210ENST00000456853 1394 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
USH2AO75445 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC6.29□□□□□ -1.4
USH2AO75445 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
USH2AO75445 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC6.29□□□□□ -1.4
USH2AO75445 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
USH2AO75445 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC6.29□□□□□ -1.4
USH2AO75445 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
USH2AO75445 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC6.28□□□□□ -1.4
USH2AO75445 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC6.28□□□□□ -1.4
USH2AO75445 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
USH2AO75445 TAC4-203ENST00000352793 564 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
USH2AO75445 ASLP1-201ENST00000428790 637 ntBASIC6.28□□□□□ -1.4
USH2AO75445 AC008267.3-201ENST00000448776 712 ntBASIC6.28□□□□□ -1.4
USH2AO75445 CHCHD2P6-201ENST00000454346 447 ntBASIC6.28□□□□□ -1.4
USH2AO75445 HAND2-AS1-208ENST00000504740 837 ntTSL 3 BASIC6.28□□□□□ -1.4
USH2AO75445 FOS-205ENST00000555242 629 ntTSL 2 BASIC6.28□□□□□ -1.4
USH2AO75445 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC6.28□□□□□ -1.4
USH2AO75445 NAA60-236ENST00000577013 575 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
USH2AO75445 RPL26-209ENST00000584164 873 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
USH2AO75445 AL133551.1-201ENST00000610279 1222 ntBASIC6.28□□□□□ -1.4
USH2AO75445 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC6.28□□□□□ -1.4
USH2AO75445 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
USH2AO75445 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
USH2AO75445 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
USH2AO75445 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
USH2AO75445 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
USH2AO75445 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC6.28□□□□□ -1.4
USH2AO75445 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
USH2AO75445 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC6.28□□□□□ -1.4
USH2AO75445 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
USH2AO75445 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
USH2AO75445 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC6.28□□□□□ -1.4
USH2AO75445 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC6.28□□□□□ -1.4
USH2AO75445 CPA1-207ENST00000484324 1303 ntTSL 5 BASIC6.28□□□□□ -1.4
USH2AO75445 RBP1-201ENST00000232219 898 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
USH2AO75445 AL591499.1-201ENST00000307155 1153 ntBASIC6.28□□□□□ -1.4
USH2AO75445 TAGLN2-201ENST00000320307 709 ntAPPRIS P1 TSL 3 BASIC6.28□□□□□ -1.4
USH2AO75445 LINC00685-201ENST00000391707 428 ntTSL 5 BASIC6.28□□□□□ -1.4
USH2AO75445 AC073210.1-201ENST00000414799 232 ntBASIC6.28□□□□□ -1.4
USH2AO75445 AC079742.1-201ENST00000434951 357 ntTSL 3 BASIC6.28□□□□□ -1.4
USH2AO75445 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC6.28□□□□□ -1.4
USH2AO75445 RN7SL76P-201ENST00000482435 289 ntBASIC6.28□□□□□ -1.4
USH2AO75445 OARD1-214ENST00000486443 764 ntTSL 3 BASIC6.28□□□□□ -1.4
USH2AO75445 AC138035.2-201ENST00000509192 727 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
USH2AO75445 AC100858.1-201ENST00000514059 1228 ntBASIC6.28□□□□□ -1.4
USH2AO75445 AC007610.1-201ENST00000568130 498 ntTSL 3 BASIC6.28□□□□□ -1.4
USH2AO75445 AC004584.1-201ENST00000572187 549 ntTSL 3 BASIC6.28□□□□□ -1.4
USH2AO75445 AC245884.8-201ENST00000599382 880 ntBASIC6.28□□□□□ -1.4
USH2AO75445 AC068134.4-201ENST00000613365 122 ntBASIC6.28□□□□□ -1.4
USH2AO75445 RBP1-206ENST00000617459 667 ntTSL 2 BASIC6.28□□□□□ -1.4
USH2AO75445 LINC02193-207ENST00000621799 723 ntTSL 5 BASIC6.28□□□□□ -1.4
USH2AO75445 AC069287.1-202ENST00000622626 723 ntTSL 5 BASIC6.28□□□□□ -1.4
USH2AO75445 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
USH2AO75445 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
USH2AO75445 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
USH2AO75445 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC6.28□□□□□ -1.4
USH2AO75445 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC6.28□□□□□ -1.4
USH2AO75445 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC6.28□□□□□ -1.4
USH2AO75445 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC6.28□□□□□ -1.4
USH2AO75445 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
USH2AO75445 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC6.28□□□□□ -1.4
USH2AO75445 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
USH2AO75445 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC6.28□□□□□ -1.4
USH2AO75445 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
USH2AO75445 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC6.28□□□□□ -1.4
USH2AO75445 NRG1-211ENST00000520502 1330 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
USH2AO75445 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
USH2AO75445 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
USH2AO75445 GLIPR2-201ENST00000377959 812 ntTSL 3 BASIC6.28□□□□□ -1.4
USH2AO75445 ZNF32-AS2-201ENST00000418966 905 ntTSL 5 BASIC6.28□□□□□ -1.4
USH2AO75445 AC078925.1-201ENST00000535370 568 ntTSL 2 BASIC6.28□□□□□ -1.4
USH2AO75445 SEC11A-203ENST00000558134 971 ntTSL 3 BASIC6.28□□□□□ -1.4
USH2AO75445 TUBB4A-207ENST00000596926 548 ntTSL 4 BASIC6.28□□□□□ -1.4
USH2AO75445 AL121992.3-201ENST00000606186 346 ntBASIC6.28□□□□□ -1.4
USH2AO75445 AC127002.1-201ENST00000619123 455 ntBASIC6.28□□□□□ -1.4
USH2AO75445 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC6.28□□□□□ -1.4
USH2AO75445 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
USH2AO75445 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC6.28□□□□□ -1.4
USH2AO75445 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC6.28□□□□□ -1.4
USH2AO75445 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
USH2AO75445 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC6.28□□□□□ -1.4
USH2AO75445 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
USH2AO75445 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC6.28□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms