Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 ACR-203ENST00000529621 708 ntTSL 5 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 CYGB-203ENST00000589145 788 ntTSL 3 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 AC009955.4-201ENST00000597192 544 ntBASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 AC009542.2-202ENST00000619004 1067 ntBASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 AC016397.2-201ENST00000624848 1985 ntBASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 HSPA8P5-201ENST00000456928 2069 ntBASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
AP4E1Q9UPM8 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 GOLGA8VP-201ENST00000559009 1798 ntBASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 FAM21FP-201ENST00000426241 1131 ntBASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 ATP5G2P4-201ENST00000442175 420 ntBASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 MIR4783-201ENST00000580343 82 ntBASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 AC010328.2-201ENST00000597698 1111 ntBASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 MIR6720-201ENST00000611664 98 ntBASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms