Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 GNAL-203ENST00000423027 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 AL136309.1-201ENST00000403917 691 ntBASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 MIR663B-201ENST00000408361 115 ntBASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 POM121L10P-201ENST00000436994 1285 ntBASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 HIST2H2BB-201ENST00000449108 381 ntBASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 ATP6V0CP2-201ENST00000469409 207 ntBASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 AP001002.3-201ENST00000623482 206 ntBASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 AC005562.1-201ENST00000583030 3219 ntBASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 PPME1-201ENST00000328257 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
CLIP3Q96DZ5 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 DNM1P41-201ENST00000623634 3350 ntBASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 LINC00552-201ENST00000625151 2579 ntBASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 HNRNPA1P63-201ENST00000427917 963 ntBASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 AC004898.1-201ENST00000451057 766 ntBASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 AP003171.2-201ENST00000528208 925 ntBASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms