Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
VPS13CQ709C8 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
VPS13CQ709C8 MIR4254-201ENST00000581063 76 ntBASIC11.78□□□□□ -0.52
VPS13CQ709C8 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
VPS13CQ709C8 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
VPS13CQ709C8 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
VPS13CQ709C8 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
VPS13CQ709C8 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
VPS13CQ709C8 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 TMBIM7P-203ENST00000641617 1718 ntBASIC11.78□□□□□ -0.52
VPS13CQ709C8 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
VPS13CQ709C8 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
VPS13CQ709C8 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
VPS13CQ709C8 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 IFNWP2-201ENST00000431203 580 ntBASIC11.78□□□□□ -0.52
VPS13CQ709C8 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
VPS13CQ709C8 AP001043.1-206ENST00000613045 730 ntTSL 5 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
VPS13CQ709C8 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
VPS13CQ709C8 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC11.78□□□□□ -0.52
VPS13CQ709C8 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
VPS13CQ709C8 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
VPS13CQ709C8 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC11.77□□□□□ -0.52
VPS13CQ709C8 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.52
VPS13CQ709C8 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC11.77□□□□□ -0.52
VPS13CQ709C8 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
VPS13CQ709C8 PPM1N-203ENST00000396737 872 ntTSL 2 BASIC11.77□□□□□ -0.52
VPS13CQ709C8 GAS5-209ENST00000430245 723 ntTSL 3 BASIC11.77□□□□□ -0.52
VPS13CQ709C8 EEF1DP5-201ENST00000431410 772 ntBASIC11.77□□□□□ -0.52
VPS13CQ709C8 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
VPS13CQ709C8 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
VPS13CQ709C8 ZNF724-202ENST00000597037 780 ntTSL 2 BASIC11.77□□□□□ -0.52
VPS13CQ709C8 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
VPS13CQ709C8 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
VPS13CQ709C8 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
VPS13CQ709C8 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC11.77□□□□□ -0.52
VPS13CQ709C8 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
VPS13CQ709C8 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
VPS13CQ709C8 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
VPS13CQ709C8 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
VPS13CQ709C8 ODCP-201ENST00000459650 1639 ntBASIC11.77□□□□□ -0.53
VPS13CQ709C8 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
VPS13CQ709C8 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
VPS13CQ709C8 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
VPS13CQ709C8 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC11.77□□□□□ -0.53
VPS13CQ709C8 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC11.77□□□□□ -0.53
VPS13CQ709C8 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
VPS13CQ709C8 ATP5J-204ENST00000400093 1179 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
VPS13CQ709C8 ZNF877P-201ENST00000437614 612 ntBASIC11.77□□□□□ -0.53
VPS13CQ709C8 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
VPS13CQ709C8 YWHAE-212ENST00000575977 540 ntTSL 2 BASIC11.77□□□□□ -0.53
VPS13CQ709C8 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
VPS13CQ709C8 AC245369.7-201ENST00000631386 350 ntBASIC11.77□□□□□ -0.53
VPS13CQ709C8 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.53
VPS13CQ709C8 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
VPS13CQ709C8 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC11.77□□□□□ -0.53
VPS13CQ709C8 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
VPS13CQ709C8 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC11.77□□□□□ -0.53
VPS13CQ709C8 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC11.77□□□□□ -0.53
VPS13CQ709C8 AC018442.1-201ENST00000421439 2061 ntBASIC11.77□□□□□ -0.53
VPS13CQ709C8 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC11.77□□□□□ -0.53
VPS13CQ709C8 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
VPS13CQ709C8 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC11.77□□□□□ -0.53
VPS13CQ709C8 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC11.77□□□□□ -0.53
VPS13CQ709C8 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
VPS13CQ709C8 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC11.77□□□□□ -0.53
VPS13CQ709C8 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC11.77□□□□□ -0.53
VPS13CQ709C8 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC11.77□□□□□ -0.53
VPS13CQ709C8 DRG2-220ENST00000583355 891 ntTSL 3 BASIC11.77□□□□□ -0.53
VPS13CQ709C8 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
VPS13CQ709C8 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
VPS13CQ709C8 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
VPS13CQ709C8 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC11.77□□□□□ -0.53
VPS13CQ709C8 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC11.77□□□□□ -0.53
VPS13CQ709C8 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC11.76□□□□□ -0.53
VPS13CQ709C8 RPL3P2-204ENST00000413027 1203 ntBASIC11.76□□□□□ -0.53
VPS13CQ709C8 RN7SL767P-201ENST00000493013 295 ntBASIC11.76□□□□□ -0.53
VPS13CQ709C8 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC11.76□□□□□ -0.53
VPS13CQ709C8 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC11.76□□□□□ -0.53
VPS13CQ709C8 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 AC011489.1-201ENST00000586744 690 ntTSL 3 BASIC11.76□□□□□ -0.53
VPS13CQ709C8 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC11.76□□□□□ -0.53
VPS13CQ709C8 ERAS-202ENST00000636362 826 ntAPPRIS P1 TSL 3 BASIC11.76□□□□□ -0.53
VPS13CQ709C8 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms