Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC021146.12-201ENST00000608365 477 ntTSL 2 BASIC8.66□□□□□ -1.02
HSPG2P98160 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
HSPG2P98160 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC8.66□□□□□ -1.02
HSPG2P98160 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
HSPG2P98160 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
HSPG2P98160 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
HSPG2P98160 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
HSPG2P98160 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
HSPG2P98160 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
HSPG2P98160 TSGA13-201ENST00000356588 1372 ntAPPRIS P2 TSL 1 (best) BASIC8.66□□□□□ -1.02
HSPG2P98160 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
HSPG2P98160 AC104115.1-201ENST00000484005 623 ntBASIC8.66□□□□□ -1.02
HSPG2P98160 AC099524.1-203ENST00000565272 756 ntTSL 5 BASIC8.66□□□□□ -1.02
HSPG2P98160 PMM2-216ENST00000569958 698 ntTSL 2 BASIC8.66□□□□□ -1.02
HSPG2P98160 MIR7704-201ENST00000610524 59 ntBASIC8.66□□□□□ -1.02
HSPG2P98160 MEP1AP1-201ENST00000636082 1097 ntBASIC8.66□□□□□ -1.02
HSPG2P98160 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
HSPG2P98160 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
HSPG2P98160 KRT18P45-201ENST00000515347 1333 ntBASIC8.65□□□□□ -1.02
HSPG2P98160 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
HSPG2P98160 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.02
HSPG2P98160 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
HSPG2P98160 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC8.65□□□□□ -1.02
HSPG2P98160 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
HSPG2P98160 AC105446.1-201ENST00000441882 407 ntTSL 3 BASIC8.65□□□□□ -1.02
HSPG2P98160 AP005273.1-201ENST00000444862 522 ntTSL 3 BASIC8.65□□□□□ -1.02
HSPG2P98160 SMCR2-201ENST00000456090 564 ntTSL 2 BASIC8.65□□□□□ -1.02
HSPG2P98160 AC010202.1-201ENST00000551181 405 ntBASIC8.65□□□□□ -1.02
HSPG2P98160 AC099552.4-201ENST00000624248 949 ntBASIC8.65□□□□□ -1.02
HSPG2P98160 AC245427.1-201ENST00000633705 760 ntAPPRIS P1 BASIC8.65□□□□□ -1.02
HSPG2P98160 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC8.65□□□□□ -1.02
HSPG2P98160 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC8.65□□□□□ -1.02
HSPG2P98160 SERPINE3-203ENST00000521255 1439 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
HSPG2P98160 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
HSPG2P98160 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
HSPG2P98160 SF1-209ENST00000433274 2317 ntTSL 2 BASIC8.65□□□□□ -1.02
HSPG2P98160 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC8.65□□□□□ -1.02
HSPG2P98160 FUK-207ENST00000571514 3054 ntTSL 2 BASIC8.65□□□□□ -1.02
HSPG2P98160 AC022532.1-201ENST00000624563 1728 ntBASIC8.65□□□□□ -1.02
HSPG2P98160 ZNF570-202ENST00000586475 1985 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
HSPG2P98160 CACNB4-201ENST00000201943 1389 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
HSPG2P98160 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
HSPG2P98160 HSD3BP1-201ENST00000286193 1111 ntBASIC8.65□□□□□ -1.02
HSPG2P98160 MRPL55-209ENST00000366735 1212 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
HSPG2P98160 HDGF-202ENST00000368206 960 ntTSL 5 BASIC8.65□□□□□ -1.02
HSPG2P98160 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
HSPG2P98160 RN7SL351P-201ENST00000469306 248 ntBASIC8.65□□□□□ -1.02
HSPG2P98160 RN7SL477P-201ENST00000488440 286 ntBASIC8.65□□□□□ -1.02
HSPG2P98160 INCA1-202ENST00000574617 1260 ntAPPRIS ALT2 TSL 1 (best) BASIC8.65□□□□□ -1.02
HSPG2P98160 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC8.65□□□□□ -1.02
HSPG2P98160 FXYD4-204ENST00000616495 778 ntAPPRIS P1 TSL 5 BASIC8.65□□□□□ -1.02
HSPG2P98160 GABARAPL1-219ENST00000629504 379 ntTSL 4 BASIC8.65□□□□□ -1.02
HSPG2P98160 SALL4P6-201ENST00000429385 1691 ntBASIC8.65□□□□□ -1.02
HSPG2P98160 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
HSPG2P98160 PTN-202ENST00000393083 1599 ntTSL 5 BASIC8.65□□□□□ -1.02
HSPG2P98160 LARP4-207ENST00000518561 1578 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
HSPG2P98160 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC8.65□□□□□ -1.02
HSPG2P98160 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC8.65□□□□□ -1.02
HSPG2P98160 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.02
HSPG2P98160 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC8.65□□□□□ -1.02
HSPG2P98160 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
HSPG2P98160 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC8.65□□□□□ -1.03
HSPG2P98160 AC064850.1-201ENST00000413279 1398 ntBASIC8.65□□□□□ -1.03
HSPG2P98160 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.03
HSPG2P98160 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
HSPG2P98160 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC8.65□□□□□ -1.03
HSPG2P98160 SUGT1-202ENST00000343788 1217 ntAPPRIS ALT2 TSL 1 (best) BASIC8.65□□□□□ -1.03
HSPG2P98160 MIR766-201ENST00000390223 111 ntBASIC8.65□□□□□ -1.03
HSPG2P98160 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.03
HSPG2P98160 AC138392.1-201ENST00000427577 921 ntBASIC8.65□□□□□ -1.03
HSPG2P98160 CST7-201ENST00000480798 930 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
HSPG2P98160 RNA5SP288-201ENST00000516075 93 ntBASIC8.65□□□□□ -1.03
HSPG2P98160 GOLGA2P10-201ENST00000550961 817 ntBASIC8.65□□□□□ -1.03
HSPG2P98160 BCL2L2-PABPN1-201ENST00000553781 1241 ntAPPRIS P1 TSL 2 BASIC8.65□□□□□ -1.03
HSPG2P98160 RN7SL322P-201ENST00000583519 299 ntBASIC8.65□□□□□ -1.03
HSPG2P98160 AC063977.2-201ENST00000601996 421 ntBASIC8.65□□□□□ -1.03
HSPG2P98160 Metazoa_SRP.122-201ENST00000610476 285 ntBASIC8.65□□□□□ -1.03
HSPG2P98160 FDPS-220ENST00000611010 1196 ntTSL 5 BASIC8.65□□□□□ -1.03
HSPG2P98160 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
HSPG2P98160 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
HSPG2P98160 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
HSPG2P98160 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC8.65□□□□□ -1.03
HSPG2P98160 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
HSPG2P98160 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
HSPG2P98160 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC8.65□□□□□ -1.03
HSPG2P98160 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
HSPG2P98160 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC8.65□□□□□ -1.03
HSPG2P98160 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
HSPG2P98160 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
HSPG2P98160 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC8.64□□□□□ -1.03
HSPG2P98160 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
HSPG2P98160 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
HSPG2P98160 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
HSPG2P98160 MKL1-204ENST00000402630 747 ntTSL 2 BASIC8.64□□□□□ -1.03
HSPG2P98160 AL358215.1-201ENST00000481350 482 ntTSL 5 BASIC8.64□□□□□ -1.03
HSPG2P98160 AC008808.2-201ENST00000510349 569 ntTSL 3 BASIC8.64□□□□□ -1.03
HSPG2P98160 AC140658.4-201ENST00000561990 352 ntBASIC8.64□□□□□ -1.03
HSPG2P98160 AC002985.1-201ENST00000596918 685 ntAPPRIS P1 TSL 5 BASIC8.64□□□□□ -1.03
HSPG2P98160 AL031768.1-201ENST00000606542 701 ntBASIC8.64□□□□□ -1.03
HSPG2P98160 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms