Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
HDAC4P56524 TISP43-201ENST00000409793 538 ntTSL 4 BASIC15.31■□□□□ 0.04
HDAC4P56524 PTPA-215ENST00000432124 567 ntTSL 4 BASIC15.31■□□□□ 0.04
HDAC4P56524 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC15.31■□□□□ 0.04
HDAC4P56524 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC15.31■□□□□ 0.04
HDAC4P56524 MFF-223ENST00000524634 647 ntTSL 2 BASIC15.31■□□□□ 0.04
HDAC4P56524 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC15.31■□□□□ 0.04
HDAC4P56524 MIR4741-201ENST00000579822 90 ntBASIC15.31■□□□□ 0.04
HDAC4P56524 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC4P56524 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC15.31■□□□□ 0.04
HDAC4P56524 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC4P56524 CNTNAP3P2-201ENST00000617175 3861 ntBASIC15.31■□□□□ 0.04
HDAC4P56524 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC4P56524 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC4P56524 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC4P56524 E2F3P2-201ENST00000447755 1422 ntBASIC15.31■□□□□ 0.04
HDAC4P56524 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
HDAC4P56524 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC4P56524 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC15.31■□□□□ 0.04
HDAC4P56524 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC4P56524 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC15.31■□□□□ 0.04
HDAC4P56524 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC4P56524 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC4P56524 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC4P56524 AC067750.1-201ENST00000608826 6545 ntBASIC15.31■□□□□ 0.04
HDAC4P56524 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC4P56524 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC4P56524 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
HDAC4P56524 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC4P56524 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC15.31■□□□□ 0.04
HDAC4P56524 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC4P56524 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC4P56524 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
HDAC4P56524 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC15.31■□□□□ 0.04
HDAC4P56524 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
HDAC4P56524 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC4P56524 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC4P56524 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC4P56524 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC4P56524 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC4P56524 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
HDAC4P56524 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC15.3■□□□□ 0.04
HDAC4P56524 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC4P56524 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC4P56524 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC4P56524 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
HDAC4P56524 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC4P56524 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
HDAC4P56524 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC4P56524 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC15.3■□□□□ 0.04
HDAC4P56524 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC15.3■□□□□ 0.04
HDAC4P56524 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC4P56524 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC4P56524 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
HDAC4P56524 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC15.3■□□□□ 0.04
HDAC4P56524 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC15.3■□□□□ 0.04
HDAC4P56524 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC4P56524 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC15.3■□□□□ 0.04
HDAC4P56524 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
HDAC4P56524 YBX1P6-201ENST00000442962 1002 ntBASIC15.3■□□□□ 0.04
HDAC4P56524 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC15.3■□□□□ 0.04
HDAC4P56524 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC15.3■□□□□ 0.04
HDAC4P56524 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC15.3■□□□□ 0.04
HDAC4P56524 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC15.3■□□□□ 0.04
HDAC4P56524 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
HDAC4P56524 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC15.3■□□□□ 0.04
HDAC4P56524 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC15.3■□□□□ 0.04
HDAC4P56524 RNF41-210ENST00000552244 716 ntTSL 3 BASIC15.3■□□□□ 0.04
HDAC4P56524 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC15.3■□□□□ 0.04
HDAC4P56524 SORD2P-201ENST00000558556 1069 ntBASIC15.3■□□□□ 0.04
HDAC4P56524 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC4P56524 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC4P56524 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC15.3■□□□□ 0.04
HDAC4P56524 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
HDAC4P56524 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC4P56524 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC4P56524 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC4P56524 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC4P56524 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC4P56524 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC15.3■□□□□ 0.04
HDAC4P56524 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC4P56524 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC15.3■□□□□ 0.04
HDAC4P56524 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 AC126335.2-201ENST00000623362 4637 ntBASIC15.29■□□□□ 0.04
HDAC4P56524 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC15.29■□□□□ 0.04
HDAC4P56524 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
HDAC4P56524 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
HDAC4P56524 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
HDAC4P56524 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC15.29■□□□□ 0.04
HDAC4P56524 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
HDAC4P56524 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
HDAC4P56524 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC4P56524 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC15.29■□□□□ 0.04
HDAC4P56524 AC009093.10-201ENST00000641956 1442 ntBASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms