Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
CDH6P55285 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CDH6P55285 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CDH6P55285 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDH6P55285 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC15.25■□□□□ 0.03
CDH6P55285 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC15.25■□□□□ 0.03
CDH6P55285 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC15.25■□□□□ 0.03
CDH6P55285 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDH6P55285 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDH6P55285 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC15.25■□□□□ 0.03
CDH6P55285 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC15.25■□□□□ 0.03
CDH6P55285 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC15.25■□□□□ 0.03
CDH6P55285 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDH6P55285 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDH6P55285 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDH6P55285 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDH6P55285 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDH6P55285 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC15.25■□□□□ 0.03
CDH6P55285 HSPA8P5-201ENST00000456928 2069 ntBASIC15.24■□□□□ 0.03
CDH6P55285 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
CDH6P55285 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
CDH6P55285 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC15.24■□□□□ 0.03
CDH6P55285 AC005840.4-201ENST00000541242 2494 ntBASIC15.24■□□□□ 0.03
CDH6P55285 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC15.24■□□□□ 0.03
CDH6P55285 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
CDH6P55285 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC15.24■□□□□ 0.03
CDH6P55285 U91328.1-201ENST00000437528 223 ntBASIC15.24■□□□□ 0.03
CDH6P55285 RPL7P3-201ENST00000441388 714 ntBASIC15.24■□□□□ 0.03
CDH6P55285 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC15.24■□□□□ 0.03
CDH6P55285 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 CICP12-201ENST00000455801 843 ntBASIC15.24■□□□□ 0.03
CDH6P55285 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 PFN2-215ENST00000497148 743 ntTSL 4 BASIC15.24■□□□□ 0.03
CDH6P55285 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC15.24■□□□□ 0.03
CDH6P55285 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC15.24■□□□□ 0.03
CDH6P55285 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
CDH6P55285 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC15.24■□□□□ 0.03
CDH6P55285 C2orf69P2-201ENST00000562032 1123 ntBASIC15.24■□□□□ 0.03
CDH6P55285 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC15.24■□□□□ 0.03
CDH6P55285 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC15.24■□□□□ 0.03
CDH6P55285 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
CDH6P55285 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC15.24■□□□□ 0.03
CDH6P55285 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC15.24■□□□□ 0.03
CDH6P55285 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
CDH6P55285 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC15.24■□□□□ 0.03
CDH6P55285 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
CDH6P55285 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDH6P55285 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CDH6P55285 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.23■□□□□ 0.03
CDH6P55285 HPD-204ENST00000543163 1709 ntTSL 5 BASIC15.23■□□□□ 0.03
CDH6P55285 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CDH6P55285 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CDH6P55285 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC15.23■□□□□ 0.03
CDH6P55285 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC15.23■□□□□ 0.03
CDH6P55285 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CDH6P55285 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CDH6P55285 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
CDH6P55285 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CDH6P55285 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
CDH6P55285 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CDH6P55285 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CDH6P55285 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC15.23■□□□□ 0.03
CDH6P55285 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC15.23■□□□□ 0.03
CDH6P55285 PGF-202ENST00000405431 666 ntTSL 5 BASIC15.23■□□□□ 0.03
CDH6P55285 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
CDH6P55285 AC112492.5-201ENST00000421897 457 ntBASIC15.23■□□□□ 0.03
CDH6P55285 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC15.23■□□□□ 0.03
CDH6P55285 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC15.23■□□□□ 0.03
CDH6P55285 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC15.23■□□□□ 0.03
CDH6P55285 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC15.23■□□□□ 0.03
CDH6P55285 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC15.23■□□□□ 0.03
CDH6P55285 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC15.23■□□□□ 0.03
CDH6P55285 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CDH6P55285 AC079316.1-201ENST00000548397 411 ntBASIC15.23■□□□□ 0.03
CDH6P55285 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms