Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC15.17■□□□□ 0.02
COL4A4P53420 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL4A4P53420 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL4A4P53420 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL4A4P53420 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
COL4A4P53420 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC15.17■□□□□ 0.02
COL4A4P53420 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL4A4P53420 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
COL4A4P53420 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL4A4P53420 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL4A4P53420 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC15.17■□□□□ 0.02
COL4A4P53420 COCH-203ENST00000460581 2688 ntTSL 2 BASIC15.17■□□□□ 0.02
COL4A4P53420 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL4A4P53420 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL4A4P53420 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL4A4P53420 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC15.16■□□□□ 0.02
COL4A4P53420 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC15.16■□□□□ 0.02
COL4A4P53420 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL4A4P53420 PMEL-214ENST00000550447 901 ntTSL 3 BASIC15.16■□□□□ 0.02
COL4A4P53420 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC15.16■□□□□ 0.02
COL4A4P53420 NDUFB10P1-201ENST00000567319 521 ntBASIC15.16■□□□□ 0.02
COL4A4P53420 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC15.16■□□□□ 0.02
COL4A4P53420 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC15.16■□□□□ 0.02
COL4A4P53420 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC15.16■□□□□ 0.02
COL4A4P53420 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
COL4A4P53420 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC15.16■□□□□ 0.02
COL4A4P53420 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC15.16■□□□□ 0.02
COL4A4P53420 GOLGA8VP-201ENST00000559009 1798 ntBASIC15.16■□□□□ 0.02
COL4A4P53420 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL4A4P53420 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL4A4P53420 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL4A4P53420 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC15.16■□□□□ 0.02
COL4A4P53420 FKBP4P8-201ENST00000610931 1369 ntBASIC15.16■□□□□ 0.02
COL4A4P53420 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.16■□□□□ 0.02
COL4A4P53420 ADK-205ENST00000539909 1866 ntTSL 2 BASIC15.16■□□□□ 0.02
COL4A4P53420 AC020910.6-201ENST00000623084 1459 ntBASIC15.16■□□□□ 0.02
COL4A4P53420 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL4A4P53420 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL4A4P53420 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL4A4P53420 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC15.16■□□□□ 0.02
COL4A4P53420 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC15.16■□□□□ 0.02
COL4A4P53420 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL4A4P53420 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL4A4P53420 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL4A4P53420 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL4A4P53420 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL4A4P53420 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL4A4P53420 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL4A4P53420 GRPEL2P1-201ENST00000453145 339 ntBASIC15.16■□□□□ 0.02
COL4A4P53420 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC15.16■□□□□ 0.02
COL4A4P53420 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC15.16■□□□□ 0.02
COL4A4P53420 AC025186.1-201ENST00000478174 870 ntBASIC15.16■□□□□ 0.02
COL4A4P53420 KNOP1P1-201ENST00000542108 989 ntBASIC15.16■□□□□ 0.02
COL4A4P53420 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC15.16■□□□□ 0.02
COL4A4P53420 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC15.16■□□□□ 0.02
COL4A4P53420 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL4A4P53420 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL4A4P53420 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC15.16■□□□□ 0.02
COL4A4P53420 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC15.16■□□□□ 0.02
COL4A4P53420 AC233280.19-201ENST00000633223 136 ntBASIC15.16■□□□□ 0.02
COL4A4P53420 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL4A4P53420 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL4A4P53420 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
COL4A4P53420 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL4A4P53420 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
COL4A4P53420 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
COL4A4P53420 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL4A4P53420 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC15.15■□□□□ 0.02
COL4A4P53420 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC15.15■□□□□ 0.02
COL4A4P53420 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL4A4P53420 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC15.15■□□□□ 0.02
COL4A4P53420 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
COL4A4P53420 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC15.15■□□□□ 0.02
COL4A4P53420 AP000354.1-201ENST00000396982 456 ntBASIC15.15■□□□□ 0.02
COL4A4P53420 IFNWP2-201ENST00000431203 580 ntBASIC15.15■□□□□ 0.02
COL4A4P53420 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL4A4P53420 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC15.15■□□□□ 0.02
COL4A4P53420 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
COL4A4P53420 RN7SL767P-201ENST00000493013 295 ntBASIC15.15■□□□□ 0.02
COL4A4P53420 AP004550.1-201ENST00000532652 514 ntTSL 3 BASIC15.15■□□□□ 0.02
COL4A4P53420 AC018846.1-201ENST00000568231 183 ntBASIC15.15■□□□□ 0.02
COL4A4P53420 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL4A4P53420 AP005264.5-201ENST00000590066 467 ntBASIC15.15■□□□□ 0.02
COL4A4P53420 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC15.15■□□□□ 0.02
COL4A4P53420 AL591424.3-201ENST00000614278 872 ntBASIC15.15■□□□□ 0.02
COL4A4P53420 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC15.15■□□□□ 0.02
COL4A4P53420 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC15.15■□□□□ 0.02
COL4A4P53420 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL4A4P53420 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL4A4P53420 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC15.15■□□□□ 0.02
COL4A4P53420 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
COL4A4P53420 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC15.15■□□□□ 0.02
COL4A4P53420 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
COL4A4P53420 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL4A4P53420 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC15.15■□□□□ 0.02
COL4A4P53420 RER1-203ENST00000378513 3000 ntTSL 3 BASIC15.15■□□□□ 0.02
COL4A4P53420 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC15.15■□□□□ 0.02
COL4A4P53420 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL4A4P53420 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL4A4P53420 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms