Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC13.85□□□□□ -0.19
SOX3P41225 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX3P41225 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX3P41225 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX3P41225 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX3P41225 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX3P41225 FAM86MP-201ENST00000340703 885 ntBASIC13.85□□□□□ -0.19
SOX3P41225 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
SOX3P41225 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
SOX3P41225 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SOX3P41225 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC13.85□□□□□ -0.19
SOX3P41225 HOMER2P2-201ENST00000451621 847 ntBASIC13.85□□□□□ -0.19
SOX3P41225 MESTP3-201ENST00000503460 968 ntBASIC13.85□□□□□ -0.19
SOX3P41225 AP003171.2-201ENST00000528208 925 ntBASIC13.85□□□□□ -0.19
SOX3P41225 C2orf69P2-201ENST00000562032 1123 ntBASIC13.85□□□□□ -0.19
SOX3P41225 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC13.85□□□□□ -0.19
SOX3P41225 RN7SL219P-201ENST00000582872 296 ntBASIC13.85□□□□□ -0.19
SOX3P41225 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC13.85□□□□□ -0.19
SOX3P41225 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC13.85□□□□□ -0.19
SOX3P41225 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX3P41225 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX3P41225 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX3P41225 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX3P41225 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC13.85□□□□□ -0.19
SOX3P41225 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
SOX3P41225 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SOX3P41225 FKBP4P6-201ENST00000457486 1332 ntBASIC13.85□□□□□ -0.19
SOX3P41225 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX3P41225 SRC-202ENST00000373558 4304 ntTSL 5 BASIC13.85□□□□□ -0.19
SOX3P41225 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX3P41225 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC13.85□□□□□ -0.19
SOX3P41225 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX3P41225 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC13.85□□□□□ -0.19
SOX3P41225 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX3P41225 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC13.85□□□□□ -0.19
SOX3P41225 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX3P41225 APP-205ENST00000358918 2366 ntTSL 5 BASIC13.85□□□□□ -0.19
SOX3P41225 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
SOX3P41225 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
SOX3P41225 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC13.84□□□□□ -0.19
SOX3P41225 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
SOX3P41225 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC13.84□□□□□ -0.19
SOX3P41225 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
SOX3P41225 MIR1908-201ENST00000410394 80 ntBASIC13.84□□□□□ -0.19
SOX3P41225 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC13.84□□□□□ -0.19
SOX3P41225 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC13.84□□□□□ -0.19
SOX3P41225 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC13.84□□□□□ -0.19
SOX3P41225 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC13.84□□□□□ -0.19
SOX3P41225 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC13.84□□□□□ -0.19
SOX3P41225 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC13.84□□□□□ -0.19
SOX3P41225 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC13.84□□□□□ -0.19
SOX3P41225 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC13.84□□□□□ -0.19
SOX3P41225 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC13.84□□□□□ -0.19
SOX3P41225 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC13.84□□□□□ -0.19
SOX3P41225 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC13.84□□□□□ -0.19
SOX3P41225 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC13.84□□□□□ -0.19
SOX3P41225 RN7SL713P-201ENST00000582127 302 ntBASIC13.84□□□□□ -0.19
SOX3P41225 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC13.84□□□□□ -0.19
SOX3P41225 AC073413.1-201ENST00000603927 732 ntBASIC13.84□□□□□ -0.19
SOX3P41225 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 MIR6799-201ENST00000620297 69 ntBASIC13.84□□□□□ -0.19
SOX3P41225 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC13.84□□□□□ -0.19
SOX3P41225 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC13.84□□□□□ -0.19
SOX3P41225 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC13.84□□□□□ -0.19
SOX3P41225 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
SOX3P41225 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
SOX3P41225 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC13.84□□□□□ -0.19
SOX3P41225 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
SOX3P41225 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC13.84□□□□□ -0.19
SOX3P41225 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX3P41225 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
SOX3P41225 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms