Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC11.23□□□□□ -0.61
HLA-DMBP28068 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC11.23□□□□□ -0.61
HLA-DMBP28068 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC11.23□□□□□ -0.61
HLA-DMBP28068 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC11.23□□□□□ -0.61
HLA-DMBP28068 MBLAC2-202ENST00000514906 1936 ntBASIC11.23□□□□□ -0.61
HLA-DMBP28068 ARHGAP23P1-201ENST00000562773 1937 ntBASIC11.23□□□□□ -0.61
HLA-DMBP28068 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
HLA-DMBP28068 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
HLA-DMBP28068 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC11.23□□□□□ -0.61
HLA-DMBP28068 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC11.23□□□□□ -0.61
HLA-DMBP28068 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 APOA1-205ENST00000375329 927 ntTSL 2 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 AC215219.1-201ENST00000400706 1817 ntBASIC11.22□□□□□ -0.61
HLA-DMBP28068 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 NAA50-208ENST00000497255 789 ntTSL 5 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 HNRNPA1P48-201ENST00000562726 1377 ntBASIC11.22□□□□□ -0.61
HLA-DMBP28068 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 AC132938.2-201ENST00000579188 680 ntBASIC11.22□□□□□ -0.61
HLA-DMBP28068 CLUHP6-201ENST00000580789 941 ntBASIC11.22□□□□□ -0.61
HLA-DMBP28068 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 TMEM261P1-201ENST00000604899 340 ntBASIC11.22□□□□□ -0.61
HLA-DMBP28068 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 METTL26-214ENST00000614890 801 ntTSL 3 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 AL591163.1-201ENST00000641757 987 ntBASIC11.22□□□□□ -0.61
HLA-DMBP28068 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 AC107918.4-201ENST00000641966 3141 ntBASIC11.22□□□□□ -0.61
HLA-DMBP28068 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
HLA-DMBP28068 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DMBP28068 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DMBP28068 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC11.21□□□□□ -0.61
HLA-DMBP28068 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DMBP28068 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DMBP28068 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC11.21□□□□□ -0.61
HLA-DMBP28068 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC11.21□□□□□ -0.61
HLA-DMBP28068 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DMBP28068 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms