Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
TPM1P09493 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
TPM1P09493 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TPM1P09493 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC16.22■□□□□ 0.19
TPM1P09493 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
TPM1P09493 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC16.22■□□□□ 0.19
TPM1P09493 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TPM1P09493 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TPM1P09493 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
TPM1P09493 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
TPM1P09493 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TPM1P09493 MRPL37P1-201ENST00000592451 1337 ntBASIC16.21■□□□□ 0.19
TPM1P09493 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC16.21■□□□□ 0.19
TPM1P09493 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TPM1P09493 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TPM1P09493 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
TPM1P09493 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC16.21■□□□□ 0.19
TPM1P09493 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TPM1P09493 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TPM1P09493 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TPM1P09493 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
TPM1P09493 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TPM1P09493 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TPM1P09493 AC015688.4-201ENST00000580780 1647 ntBASIC16.21■□□□□ 0.19
TPM1P09493 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TPM1P09493 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TPM1P09493 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TPM1P09493 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TPM1P09493 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC16.21■□□□□ 0.19
TPM1P09493 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC16.21■□□□□ 0.19
TPM1P09493 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.21■□□□□ 0.19
TPM1P09493 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
TPM1P09493 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC16.21■□□□□ 0.19
TPM1P09493 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.21■□□□□ 0.19
TPM1P09493 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
TPM1P09493 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
TPM1P09493 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC16.21■□□□□ 0.19
TPM1P09493 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC16.21■□□□□ 0.19
TPM1P09493 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TPM1P09493 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC16.21■□□□□ 0.19
TPM1P09493 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC16.21■□□□□ 0.19
TPM1P09493 AL590560.3-201ENST00000623350 461 ntBASIC16.21■□□□□ 0.19
TPM1P09493 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC16.21■□□□□ 0.19
TPM1P09493 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
TPM1P09493 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TPM1P09493 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC16.21■□□□□ 0.19
TPM1P09493 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TPM1P09493 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC16.21■□□□□ 0.18
TPM1P09493 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TPM1P09493 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TPM1P09493 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
TPM1P09493 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TPM1P09493 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC16.2■□□□□ 0.18
TPM1P09493 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC16.2■□□□□ 0.18
TPM1P09493 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC16.2■□□□□ 0.18
TPM1P09493 MYO9B-204ENST00000594824 7595 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
TPM1P09493 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC16.2■□□□□ 0.18
TPM1P09493 OR2I1P-208ENST00000641137 4948 ntBASIC16.2■□□□□ 0.18
TPM1P09493 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TPM1P09493 GSN-209ENST00000449733 2702 ntTSL 2 BASIC16.2■□□□□ 0.18
TPM1P09493 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
TPM1P09493 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TPM1P09493 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC16.2■□□□□ 0.18
TPM1P09493 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC16.2■□□□□ 0.18
TPM1P09493 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
TPM1P09493 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC16.2■□□□□ 0.18
TPM1P09493 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TPM1P09493 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC16.2■□□□□ 0.18
TPM1P09493 CACNA1G-220ENST00000507896 6600 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TPM1P09493 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TPM1P09493 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TPM1P09493 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TPM1P09493 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TPM1P09493 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TPM1P09493 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
TPM1P09493 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC16.2■□□□□ 0.18
TPM1P09493 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.2■□□□□ 0.18
TPM1P09493 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.2■□□□□ 0.18
TPM1P09493 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
TPM1P09493 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
TPM1P09493 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TPM1P09493 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC16.2■□□□□ 0.18
TPM1P09493 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.2■□□□□ 0.18
TPM1P09493 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TPM1P09493 AC015911.4-201ENST00000588022 1070 ntBASIC16.2■□□□□ 0.18
TPM1P09493 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.2■□□□□ 0.18
TPM1P09493 SRD5A3P1-201ENST00000603021 949 ntBASIC16.2■□□□□ 0.18
TPM1P09493 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC16.2■□□□□ 0.18
TPM1P09493 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC16.2■□□□□ 0.18
TPM1P09493 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC16.2■□□□□ 0.18
TPM1P09493 AC007431.3-201ENST00000623221 587 ntBASIC16.2■□□□□ 0.18
TPM1P09493 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC16.2■□□□□ 0.18
TPM1P09493 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TPM1P09493 LINC00384-201ENST00000437721 6852 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TPM1P09493 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TPM1P09493 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
TPM1P09493 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TPM1P09493 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TPM1P09493 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TPM1P09493 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms