Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC13.35□□□□□ -0.27
HOXD4P09016 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
HOXD4P09016 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
HOXD4P09016 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC13.35□□□□□ -0.27
HOXD4P09016 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC13.35□□□□□ -0.27
HOXD4P09016 WASH3P-207ENST00000560956 1394 ntBASIC13.35□□□□□ -0.27
HOXD4P09016 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC13.35□□□□□ -0.27
HOXD4P09016 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
HOXD4P09016 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
HOXD4P09016 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 OARD1-204ENST00000464633 717 ntTSL 2 BASIC13.35□□□□□ -0.27
HOXD4P09016 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC13.35□□□□□ -0.27
HOXD4P09016 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC13.35□□□□□ -0.27
HOXD4P09016 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC13.35□□□□□ -0.27
HOXD4P09016 AC100827.2-201ENST00000563214 1194 ntBASIC13.35□□□□□ -0.27
HOXD4P09016 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC13.35□□□□□ -0.27
HOXD4P09016 DUX4L46-201ENST00000566845 751 ntBASIC13.35□□□□□ -0.27
HOXD4P09016 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 AC004466.1-201ENST00000599515 1080 ntBASIC13.35□□□□□ -0.27
HOXD4P09016 BNIP3P13-201ENST00000599968 566 ntBASIC13.35□□□□□ -0.27
HOXD4P09016 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
HOXD4P09016 AL358472.3-201ENST00000608147 415 ntBASIC13.35□□□□□ -0.27
HOXD4P09016 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC13.35□□□□□ -0.27
HOXD4P09016 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC13.35□□□□□ -0.27
HOXD4P09016 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC13.35□□□□□ -0.27
HOXD4P09016 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.35□□□□□ -0.27
HOXD4P09016 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
HOXD4P09016 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
HOXD4P09016 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 AL138725.1-201ENST00000407347 1314 ntBASIC13.35□□□□□ -0.27
HOXD4P09016 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC13.35□□□□□ -0.27
HOXD4P09016 KRT8P19-201ENST00000551916 1455 ntBASIC13.35□□□□□ -0.27
HOXD4P09016 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC13.35□□□□□ -0.27
HOXD4P09016 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
HOXD4P09016 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
HOXD4P09016 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
HOXD4P09016 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 PPT1-213ENST00000641319 2388 ntBASIC13.35□□□□□ -0.27
HOXD4P09016 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
HOXD4P09016 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD4P09016 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD4P09016 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
HOXD4P09016 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC13.34□□□□□ -0.27
HOXD4P09016 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC13.34□□□□□ -0.27
HOXD4P09016 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD4P09016 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
HOXD4P09016 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD4P09016 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
HOXD4P09016 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC13.34□□□□□ -0.27
HOXD4P09016 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC13.34□□□□□ -0.27
HOXD4P09016 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD4P09016 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD4P09016 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC13.34□□□□□ -0.27
HOXD4P09016 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD4P09016 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD4P09016 SHC1P1-201ENST00000425230 1745 ntBASIC13.34□□□□□ -0.27
HOXD4P09016 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
HOXD4P09016 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD4P09016 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD4P09016 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.34□□□□□ -0.27
HOXD4P09016 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD4P09016 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD4P09016 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD4P09016 DPM3-202ENST00000368399 517 ntBASIC13.34□□□□□ -0.27
HOXD4P09016 AK6-201ENST00000380818 1183 ntTSL 2 BASIC13.34□□□□□ -0.27
HOXD4P09016 AC010141.1-201ENST00000411585 623 ntBASIC13.34□□□□□ -0.27
HOXD4P09016 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC13.34□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms