Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
NPHP1O15259 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
NPHP1O15259 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NPHP1O15259 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NPHP1O15259 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NPHP1O15259 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NPHP1O15259 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
NPHP1O15259 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NPHP1O15259 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
NPHP1O15259 FAS-202ENST00000352159 1722 ntTSL 5 BASIC18.44■□□□□ 0.54
NPHP1O15259 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
NPHP1O15259 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NPHP1O15259 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
NPHP1O15259 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
NPHP1O15259 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
NPHP1O15259 LBH-202ENST00000401506 485 ntTSL 3 BASIC18.44■□□□□ 0.54
NPHP1O15259 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC18.44■□□□□ 0.54
NPHP1O15259 TSPY25P-201ENST00000429463 745 ntBASIC18.44■□□□□ 0.54
NPHP1O15259 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC18.44■□□□□ 0.54
NPHP1O15259 CHCHD2P9-201ENST00000461726 456 ntBASIC18.44■□□□□ 0.54
NPHP1O15259 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC18.44■□□□□ 0.54
NPHP1O15259 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC18.44■□□□□ 0.54
NPHP1O15259 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
NPHP1O15259 VPS18-202ENST00000558474 873 ntTSL 3 BASIC18.44■□□□□ 0.54
NPHP1O15259 PHBP15-201ENST00000574228 665 ntBASIC18.44■□□□□ 0.54
NPHP1O15259 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC18.44■□□□□ 0.54
NPHP1O15259 AC138894.2-201ENST00000602838 371 ntBASIC18.44■□□□□ 0.54
NPHP1O15259 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC18.44■□□□□ 0.54
NPHP1O15259 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC18.44■□□□□ 0.54
NPHP1O15259 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC18.44■□□□□ 0.54
NPHP1O15259 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC18.44■□□□□ 0.54
NPHP1O15259 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
NPHP1O15259 AC013726.1-201ENST00000563747 2285 ntBASIC18.44■□□□□ 0.54
NPHP1O15259 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
NPHP1O15259 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
NPHP1O15259 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NPHP1O15259 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
NPHP1O15259 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC18.43■□□□□ 0.54
NPHP1O15259 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC18.43■□□□□ 0.54
NPHP1O15259 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
NPHP1O15259 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
NPHP1O15259 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC18.43■□□□□ 0.54
NPHP1O15259 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
NPHP1O15259 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NPHP1O15259 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC18.43■□□□□ 0.54
NPHP1O15259 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NPHP1O15259 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NPHP1O15259 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
NPHP1O15259 AL807761.2-201ENST00000422849 729 ntBASIC18.43■□□□□ 0.54
NPHP1O15259 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
NPHP1O15259 AL627422.1-201ENST00000434104 580 ntBASIC18.43■□□□□ 0.54
NPHP1O15259 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
NPHP1O15259 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
NPHP1O15259 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
NPHP1O15259 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
NPHP1O15259 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
NPHP1O15259 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
NPHP1O15259 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
NPHP1O15259 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NPHP1O15259 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NPHP1O15259 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
NPHP1O15259 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
NPHP1O15259 KCP-203ENST00000610776 5108 ntTSL 5 BASIC18.43■□□□□ 0.54
NPHP1O15259 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
NPHP1O15259 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
NPHP1O15259 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NPHP1O15259 AC104640.1-201ENST00000562617 2109 ntBASIC18.43■□□□□ 0.54
NPHP1O15259 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NPHP1O15259 WARS-232ENST00000556645 2508 ntTSL 5 BASIC18.43■□□□□ 0.54
NPHP1O15259 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
NPHP1O15259 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
NPHP1O15259 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC18.42■□□□□ 0.54
NPHP1O15259 AC023024.2-201ENST00000623561 1993 ntBASIC18.42■□□□□ 0.54
NPHP1O15259 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
NPHP1O15259 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
NPHP1O15259 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC18.42■□□□□ 0.54
NPHP1O15259 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
NPHP1O15259 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC18.42■□□□□ 0.54
NPHP1O15259 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
NPHP1O15259 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC18.42■□□□□ 0.54
NPHP1O15259 REXO1L2P-201ENST00000425429 2069 ntBASIC18.42■□□□□ 0.54
NPHP1O15259 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC18.42■□□□□ 0.54
NPHP1O15259 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
NPHP1O15259 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NPHP1O15259 DNM3-202ENST00000367731 7613 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
NPHP1O15259 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NPHP1O15259 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC18.42■□□□□ 0.54
NPHP1O15259 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
NPHP1O15259 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC18.42■□□□□ 0.54
NPHP1O15259 HNRNPA1P27-201ENST00000412087 955 ntBASIC18.42■□□□□ 0.54
NPHP1O15259 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC18.42■□□□□ 0.54
NPHP1O15259 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC18.42■□□□□ 0.54
NPHP1O15259 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
NPHP1O15259 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC18.42■□□□□ 0.54
NPHP1O15259 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC18.42■□□□□ 0.54
NPHP1O15259 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC18.42■□□□□ 0.54
NPHP1O15259 MIR3188-201ENST00000583494 85 ntBASIC18.42■□□□□ 0.54
NPHP1O15259 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC18.42■□□□□ 0.54
NPHP1O15259 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC18.42■□□□□ 0.54
NPHP1O15259 DDX5-235ENST00000630471 473 ntTSL 4 BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms