Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
CNTN3Q9P232 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
CNTN3Q9P232 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CNTN3Q9P232 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CNTN3Q9P232 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC15.66■□□□□ 0.1
CNTN3Q9P232 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.66■□□□□ 0.1
CNTN3Q9P232 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CNTN3Q9P232 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CNTN3Q9P232 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.66■□□□□ 0.1
CNTN3Q9P232 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CNTN3Q9P232 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CNTN3Q9P232 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
CNTN3Q9P232 AC140479.7-201ENST00000636301 2332 ntBASIC15.66■□□□□ 0.1
CNTN3Q9P232 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CNTN3Q9P232 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC15.66■□□□□ 0.1
CNTN3Q9P232 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC15.66■□□□□ 0.1
CNTN3Q9P232 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CNTN3Q9P232 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CNTN3Q9P232 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC15.66■□□□□ 0.1
CNTN3Q9P232 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CNTN3Q9P232 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CNTN3Q9P232 AC007274.2-201ENST00000421675 662 ntBASIC15.66■□□□□ 0.1
CNTN3Q9P232 POU5F1P2-201ENST00000521750 823 ntBASIC15.66■□□□□ 0.1
CNTN3Q9P232 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
CNTN3Q9P232 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC15.66■□□□□ 0.1
CNTN3Q9P232 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CNTN3Q9P232 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC15.66■□□□□ 0.1
CNTN3Q9P232 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC15.66■□□□□ 0.1
CNTN3Q9P232 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CNTN3Q9P232 MIR4754-201ENST00000582477 89 ntBASIC15.66■□□□□ 0.1
CNTN3Q9P232 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC15.66■□□□□ 0.1
CNTN3Q9P232 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CNTN3Q9P232 MPI-203ENST00000535694 1523 ntTSL 2 BASIC15.66■□□□□ 0.1
CNTN3Q9P232 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
CNTN3Q9P232 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CNTN3Q9P232 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CNTN3Q9P232 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CNTN3Q9P232 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CNTN3Q9P232 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CNTN3Q9P232 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CNTN3Q9P232 AC064801.2-201ENST00000625052 1303 ntBASIC15.66■□□□□ 0.1
CNTN3Q9P232 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC15.66■□□□□ 0.1
CNTN3Q9P232 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CNTN3Q9P232 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC15.65■□□□□ 0.1
CNTN3Q9P232 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC15.65■□□□□ 0.1
CNTN3Q9P232 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CNTN3Q9P232 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CNTN3Q9P232 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CNTN3Q9P232 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC15.65■□□□□ 0.1
CNTN3Q9P232 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
CNTN3Q9P232 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CNTN3Q9P232 JTB-202ENST00000356648 1040 ntTSL 2 BASIC15.65■□□□□ 0.1
CNTN3Q9P232 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
CNTN3Q9P232 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC15.65■□□□□ 0.1
CNTN3Q9P232 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC15.65■□□□□ 0.1
CNTN3Q9P232 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC15.65■□□□□ 0.1
CNTN3Q9P232 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC15.65■□□□□ 0.1
CNTN3Q9P232 AC116345.2-201ENST00000512837 523 ntBASIC15.65■□□□□ 0.1
CNTN3Q9P232 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC15.65■□□□□ 0.1
CNTN3Q9P232 AC242376.1-201ENST00000559033 726 ntBASIC15.65■□□□□ 0.1
CNTN3Q9P232 FGFR3P5-201ENST00000564496 886 ntBASIC15.65■□□□□ 0.1
CNTN3Q9P232 ARL16-210ENST00000574938 751 ntTSL 2 BASIC15.65■□□□□ 0.1
CNTN3Q9P232 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC15.65■□□□□ 0.1
CNTN3Q9P232 IRF3-215ENST00000596822 823 ntTSL 3 BASIC15.65■□□□□ 0.1
CNTN3Q9P232 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CNTN3Q9P232 AC104506.1-201ENST00000609247 429 ntBASIC15.65■□□□□ 0.1
CNTN3Q9P232 AC090386.2-201ENST00000623010 1039 ntBASIC15.65■□□□□ 0.1
CNTN3Q9P232 AC079336.7-201ENST00000623428 1078 ntBASIC15.65■□□□□ 0.1
CNTN3Q9P232 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CNTN3Q9P232 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CNTN3Q9P232 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CNTN3Q9P232 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CNTN3Q9P232 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CNTN3Q9P232 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CNTN3Q9P232 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CNTN3Q9P232 FRMPD2B-201ENST00000431305 1347 ntBASIC15.65■□□□□ 0.1
CNTN3Q9P232 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CNTN3Q9P232 KRT8P19-201ENST00000551916 1455 ntBASIC15.65■□□□□ 0.1
CNTN3Q9P232 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CNTN3Q9P232 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CNTN3Q9P232 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
CNTN3Q9P232 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
CNTN3Q9P232 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
CNTN3Q9P232 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CNTN3Q9P232 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC15.64■□□□□ 0.09
CNTN3Q9P232 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CNTN3Q9P232 FES-203ENST00000394302 2133 ntTSL 5 BASIC15.64■□□□□ 0.09
CNTN3Q9P232 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
CNTN3Q9P232 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CNTN3Q9P232 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CNTN3Q9P232 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC15.64■□□□□ 0.09
CNTN3Q9P232 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CNTN3Q9P232 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CNTN3Q9P232 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
CNTN3Q9P232 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CNTN3Q9P232 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CNTN3Q9P232 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CNTN3Q9P232 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CNTN3Q9P232 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CNTN3Q9P232 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms