Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 AC079776.1-201ENST00000401540 1152 ntBASIC15.15■□□□□ 0.02
PCDH9Q9HC56 BOLA2P3-201ENST00000404566 256 ntBASIC15.15■□□□□ 0.02
PCDH9Q9HC56 CNN2P8-201ENST00000421872 913 ntBASIC15.15■□□□□ 0.02
PCDH9Q9HC56 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 ALG3P1-201ENST00000508806 1114 ntBASIC15.15■□□□□ 0.02
PCDH9Q9HC56 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 AL512343.1-201ENST00000605837 169 ntBASIC15.15■□□□□ 0.02
PCDH9Q9HC56 BX088702.1-201ENST00000610784 235 ntBASIC15.15■□□□□ 0.02
PCDH9Q9HC56 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 PDIA3P1-201ENST00000471856 1510 ntBASIC15.15■□□□□ 0.02
PCDH9Q9HC56 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 DDC-213ENST00000617822 1809 ntTSL 3 BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 AC090643.2-201ENST00000623442 2029 ntBASIC15.14■□□□□ 0.01
PCDH9Q9HC56 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 ARSEP1-201ENST00000420443 635 ntBASIC15.14■□□□□ 0.01
PCDH9Q9HC56 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 AC078819.1-201ENST00000547454 765 ntBASIC15.14■□□□□ 0.01
PCDH9Q9HC56 AC012085.1-201ENST00000548270 765 ntBASIC15.14■□□□□ 0.01
PCDH9Q9HC56 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 AC138466.3-201ENST00000619983 221 ntBASIC15.14■□□□□ 0.01
PCDH9Q9HC56 AC138951.2-201ENST00000623455 1161 ntBASIC15.14■□□□□ 0.01
PCDH9Q9HC56 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
PCDH9Q9HC56 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms