Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 DUX4L50-201ENST00000455245 715 ntBASIC14.65□□□□□ -0.06
HMGB4Q8WW32 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 AC003686.1-201ENST00000550956 1034 ntBASIC14.65□□□□□ -0.06
HMGB4Q8WW32 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.07
HMGB4Q8WW32 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.65□□□□□ -0.07
HMGB4Q8WW32 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.65□□□□□ -0.07
HMGB4Q8WW32 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 RN7SL530P-201ENST00000485097 298 ntBASIC14.64□□□□□ -0.07
HMGB4Q8WW32 NDUFS6P1-201ENST00000485187 316 ntBASIC14.64□□□□□ -0.07
HMGB4Q8WW32 RHEB-207ENST00000496004 744 ntTSL 2 BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 IGHVIII-5-2-201ENST00000522505 261 ntBASIC14.64□□□□□ -0.07
HMGB4Q8WW32 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 DNM1P30-201ENST00000563586 452 ntBASIC14.64□□□□□ -0.07
HMGB4Q8WW32 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 CYP51A1P3-201ENST00000400072 1428 ntBASIC14.64□□□□□ -0.07
HMGB4Q8WW32 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 AL590440.2-201ENST00000641973 1595 ntBASIC14.64□□□□□ -0.07
HMGB4Q8WW32 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms