Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 LINC02228-204ENST00000642115 2962 ntBASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 AC007686.3-201ENST00000619017 3487 ntBASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 GSN-209ENST00000449733 2702 ntTSL 2 BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 ELK2AP-201ENST00000392510 1007 ntBASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 AC234782.1-201ENST00000451950 919 ntBASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 STUB1-204ENST00000564370 875 ntTSL 2 BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 AC006453.1-201ENST00000636037 1257 ntBASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 AC140479.7-201ENST00000636301 2332 ntBASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC60Q8IWA6 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 AC011498.7-201ENST00000624986 2027 ntBASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 AC092580.1-201ENST00000433998 658 ntBASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 AC026803.1-201ENST00000569130 274 ntBASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 AL022334.2-201ENST00000610000 484 ntBASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 MIR6769A-201ENST00000617340 73 ntBASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 AC097359.2-201ENST00000604992 2389 ntBASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms