Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC12.09□□□□□ -0.47
CDX1P47902 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC12.09□□□□□ -0.47
CDX1P47902 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 BAK1-203ENST00000442998 2212 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.47
CDX1P47902 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC12.08□□□□□ -0.47
CDX1P47902 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC12.08□□□□□ -0.47
CDX1P47902 SNX12-202ENST00000374274 2376 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.47
CDX1P47902 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
CDX1P47902 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC12.08□□□□□ -0.47
CDX1P47902 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
CDX1P47902 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CDX1P47902 HOXA7-201ENST00000242159 2018 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CDX1P47902 GTF2IRD1P1-202ENST00000457166 2426 ntTSL 2 BASIC12.08□□□□□ -0.48
CDX1P47902 AC004241.5-201ENST00000623870 2448 ntBASIC12.08□□□□□ -0.48
CDX1P47902 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
CDX1P47902 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CDX1P47902 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC12.08□□□□□ -0.48
CDX1P47902 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC12.08□□□□□ -0.48
CDX1P47902 SYBU-204ENST00000408908 2983 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
CDX1P47902 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC12.08□□□□□ -0.48
CDX1P47902 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC12.08□□□□□ -0.48
CDX1P47902 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC12.08□□□□□ -0.48
CDX1P47902 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC12.08□□□□□ -0.48
CDX1P47902 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CDX1P47902 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
CDX1P47902 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CDX1P47902 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CDX1P47902 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
CDX1P47902 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
CDX1P47902 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC12.08□□□□□ -0.48
CDX1P47902 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC12.08□□□□□ -0.48
CDX1P47902 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
CDX1P47902 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC12.08□□□□□ -0.48
CDX1P47902 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC12.08□□□□□ -0.48
CDX1P47902 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CDX1P47902 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC12.08□□□□□ -0.48
CDX1P47902 PUDP-206ENST00000540122 825 ntTSL 2 BASIC12.08□□□□□ -0.48
CDX1P47902 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC12.08□□□□□ -0.48
CDX1P47902 AL359711.2-201ENST00000563105 872 ntBASIC12.08□□□□□ -0.48
CDX1P47902 AC120045.2-201ENST00000567334 178 ntBASIC12.08□□□□□ -0.48
CDX1P47902 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC12.08□□□□□ -0.48
CDX1P47902 AC093813.1-201ENST00000605066 256 ntBASIC12.08□□□□□ -0.48
CDX1P47902 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC12.08□□□□□ -0.48
CDX1P47902 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC12.08□□□□□ -0.48
CDX1P47902 AL162274.1-201ENST00000617191 1098 ntBASIC12.08□□□□□ -0.48
CDX1P47902 CU634019.7-201ENST00000624153 1185 ntBASIC12.08□□□□□ -0.48
CDX1P47902 FP236241.2-201ENST00000624906 1185 ntBASIC12.08□□□□□ -0.48
CDX1P47902 ABBA01031660.1-201ENST00000635219 756 ntBASIC12.08□□□□□ -0.48
CDX1P47902 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
CDX1P47902 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
CDX1P47902 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CDX1P47902 TBR1-201ENST00000389554 4009 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CDX1P47902 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC12.08□□□□□ -0.48
CDX1P47902 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC12.08□□□□□ -0.48
CDX1P47902 AAR2-202ENST00000373932 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CDX1P47902 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CDX1P47902 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CDX1P47902 AC020658.7-201ENST00000624274 2442 ntBASIC12.08□□□□□ -0.48
CDX1P47902 ELN-211ENST00000414324 3139 ntAPPRIS ALT2 TSL 2 BASIC12.08□□□□□ -0.48
CDX1P47902 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CDX1P47902 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CDX1P47902 MYADM-201ENST00000336967 3047 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
CDX1P47902 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC12.08□□□□□ -0.48
CDX1P47902 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC12.08□□□□□ -0.48
CDX1P47902 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
CDX1P47902 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
CDX1P47902 AC244197.3-201ENST00000422081 2635 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
CDX1P47902 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC12.07□□□□□ -0.48
CDX1P47902 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC12.07□□□□□ -0.48
CDX1P47902 AC113367.3-201ENST00000508316 1912 ntBASIC12.07□□□□□ -0.48
CDX1P47902 CARHSP1-218ENST00000614449 2931 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
CDX1P47902 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 DNM1P41-201ENST00000623634 3350 ntBASIC12.07□□□□□ -0.48
CDX1P47902 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
CDX1P47902 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
CDX1P47902 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
CDX1P47902 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC12.07□□□□□ -0.48
CDX1P47902 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC12.07□□□□□ -0.48
CDX1P47902 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC12.07□□□□□ -0.48
CDX1P47902 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
CDX1P47902 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 OR8S1-201ENST00000310194 1080 ntBASIC12.07□□□□□ -0.48
CDX1P47902 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC12.07□□□□□ -0.48
CDX1P47902 C1QBPP1-201ENST00000400117 770 ntBASIC12.07□□□□□ -0.48
CDX1P47902 ACTG1P3-201ENST00000431775 1114 ntBASIC12.07□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms