Protein–RNA interactions for Protein: Q9BYV6

TRIM55, Tripartite motif-containing protein 55, humanhuman

Predictions only

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55Q9BYV6 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 FUZ-207ENST00000526575 482 ntTSL 4 BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 MIR4259-201ENST00000584466 101 ntBASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 AC025048.3-201ENST00000590609 569 ntBASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 AC005702.4-201ENST00000618393 416 ntBASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM55Q9BYV6 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM55Q9BYV6 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM55Q9BYV6 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
TRIM55Q9BYV6 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
TRIM55Q9BYV6 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM55Q9BYV6 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM55Q9BYV6 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM55Q9BYV6 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM55Q9BYV6 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
TRIM55Q9BYV6 HADH-202ENST00000403312 1752 ntTSL 5 BASIC14.91□□□□□ -0.02
TRIM55Q9BYV6 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM55Q9BYV6 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM55Q9BYV6 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM55Q9BYV6 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC14.91□□□□□ -0.02
TRIM55Q9BYV6 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC14.91□□□□□ -0.02
TRIM55Q9BYV6 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
TRIM55Q9BYV6 PES1-204ENST00000402284 2144 ntTSL 5 BASIC14.91□□□□□ -0.02
TRIM55Q9BYV6 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms